Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13448g00001 CTTCCTATATTGTCTGTTATTGGGCCGTTGAGAGGCGAAAATCGTGAAGGTGATGTTGATGGTGGTGAGGCTGGGAAGAAATTGGGAGTTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATTGTGAGAGAGTTTGAGAAGATATTGGGAGTGGATAACAAGAAAGTGGTTCAGCAGCTTGTGGGAGGTGCGAACCGAACTAGGCAGGAAGAAGCTCTCAAGAAAAACAAACCTGCCATTGTTGTTGGTACGCCTGGTAGGATAGCTGAGCTCAGTGCAAGTGGGAAGCTTCGCACACACGGCTGTCAATATTTGGTATTAGATGAAGTTGATGAGCTGCTGTCATTCAATTTTCGTGAAGACATGCACAGGTTATTGGAGCATGTTGGGAGGAGATCAGGTGGAGACCTAAAATCAAATGCTAAAAAGGCCGAGCGTCAGTTAATTATGGTTTCTGCAACTGTGCCGTTTTCGGTTGTTAGGGCAGCTAAAAGTTGGGGTAGCGATCCGCTTCTTGTTCAAGCTAAGAAAATTGTACCACTTGAAACTTTGTCTCCTGAGCCGGTCAATTTGTCACCGAACTCGAGTGCTAACTCCTCTAAGCCATCTAAGGCTGTGGTAGAGAGTCTACCTCCAGCATTGAAACACTATTACTGTGTTGTGAGGTTGCAGCACAAAGTTGATACATTGAGAAGATGTATTCATGCATTGGATGCAAAATTTGTGATAGTTTTCATGAATCATACCAAGCAGCTAAAGGATGTTGTCTTCAAGCTTGAGGCCCGTGGCGTGAAAGCCGCAGAGTTACATGGTGATCTTGGGAAGCTTGGTAGGTCAACAACTCTGCAGAAGTTCAAGAATGGTGAGGTTAGAGTTCTTGTGACAAATGAATTATCAGCAAGAGGTTTAGATGTGGCAGAATGTGATCTTGTGGTTAATCTGGACTTACCGACAGATACAATTCACTATGCACACCGAGCTGGCCGAACTGGTCGGCTTGGTAGAAACGGCACAGTGCTAACCATATGTGAAGAGTCAGAGGTTTTTGTTGTGAGAAAATTGCAGAAGCAACTTGAAATACCGATAGCATGCTGTAATTTTGTCGAGGGAAATCTTCTTATCACCGAAGAAGAGACTACTCTAAGCAGCGCTTCTTGA 1170 0.4453 LPILSVIGPLRGENREGDVDGGEAGKKLGVEAVIVAPSRELGMQIVREFEKILGVDNKKVVQQLVGGANRTRQEEALKKNKPAIVVGTPGRIAELSASGKLRTHGCQYLVLDEVDELLSFNFREDMHRLLEHVGRRSGGDLKSNAKKAERQLIMVSATVPFSVVRAAKSWGSDPLLVQAKKIVPLETLSPEPVNLSPNSSANSSKPSKAVVESLPPALKHYYCVVRLQHKVDTLRRCIHALDAKFVIVFMNHTKQLKDVVFKLEARGVKAAELHGDLGKLGRSTTLQKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDTIHYAHRAGRTGRLGRNGTVLTICEESEVFVVRKLQKQLEIPIACCNFVEGNLLITEEETTLSSAS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13448g00001 389 Pfam DEAD/DEAH box helicase 27 163 IPR011545 GO:0003676|GO:0005524
Trme13448g00001 389 Gene3D - 1 179 IPR027417 -
Trme13448g00001 389 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 1 374 - -
Trme13448g00001 389 CDD DEADc 19 178 - -
Trme13448g00001 389 CDD SF2_C_DEAD 218 347 - -
Trme13448g00001 389 SMART ultradead3 6 196 IPR014001 -
Trme13448g00001 389 Pfam Helicase conserved C-terminal domain 233 338 IPR001650 -
Trme13448g00001 389 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 233 377 IPR001650 -
Trme13448g00001 389 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 177 IPR014001 -
Trme13448g00001 389 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 358 IPR027417 -
Trme13448g00001 389 SMART helicmild6 257 338 IPR001650 -
Trme13448g00001 389 Gene3D - 215 371 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13448g00001 Trme-Chr13448 1 1170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13448g00001 30 372 Eukaryotic Initiation Factors Gene Family AT3G19760 24.355 1.44e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13448g00001 - - gmx:100812968 642.499