Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13429g00001 CAGCTCACTACTCTCCATCTTGATGGTAATCAACTCTCTGGAACACTTCCATCGGAGATAATTTCGTGGCAATCGCTTGATACTCTAACAATCTCAAGAAACAAAATTTCGGGTCAAATACCTGTTGCTATGTCTTCTCTTCCTAAACTTGTTTACTTGGATTTGTCTGAAAATAACATAAGTGGTGAAATCCCACCTCAGCTTGTGAAATTGAATTTTATTTTTCTCAACTTGTCCTCCAACAAGCTTACCGGGAGCATCCCTGATGAGATTGACAACCTTGCATATGAAACTAGTTTCTTGAACAATCCTCAACTGTGTACTCATAATGAAAATTTGAACCTTTCAAGCTGTTTGGCAAAAACCACACCACACTCCAGAAAAAATTCATCTTTGAAATCAAAACTTGTTGCTTTGATTCTTGCTGTTACGGTCGCTGTGTTGCTGGCCACAACTTTTTTAGCCTTCTGTATGTTGAAAAAGCGTTGCGGCAAAAAGCACTGTGGACCTAAGCTTTCAACATGGAGGCTTACCTCATTCCAAAGGCTAGATCTCACGGAAATAAATATATTCTCAAGTTTGACAGATAATAACCTCATTGGAAGTGGAGGGTTTGGCAAAGTTTACCGGATAGCTTCAACTCGTCCTGGTGAGTATGTTGCAGTGAAGAAGATTTGGAATGTCAAAGATGTAGATGACAAACTGGATAAAGAATTTATGGCTGAGGTTGAAATTTTGGGCAATATTAGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTTTTCAAGTGAGACCACTAAACTTCTTGTTTATGAATACATGGAAAATCATAGCCTGGACAAATGGCTTCATACAAAGAAGATCAAAACATCAGTTAGTGGGTTGAGTTCACATGCAGAAAATCAGTTGGTGTTGAGTTGGCCAACGAGGTTGAACATTGCCATTGGTGCTGCACAAGGTTTGTGTTACATGCATCATGAATGTTCAATGCCAATCATTCACAGAGATGTGAAGTCTAGCAATATACTGCTTGACTCTGAGTTCAAGGCAAGTATAGCAGATTTTGGACTTGCAAAGATGTTGGCGAAGAATGGGGAACCATACACCGCGTCTGTTCTAGCAGGGTCTTTCGGGTACATTCCACCAGAATATGCATATTCAACCAGGATTGATGAGAAAGTTGATGTGTATAGCTTTGGAGTTGTGCTACTAGAGCTAGTGACAGGAAGAGNGCCTAATAATGGAGGCGACAATGCATGCAGTCTGGTTGATTGGGCATGGCAGCATTGCAATGAAGGGAAATGCATCACTGATGCCTTTGATGAGGCCTTCCACAAAGGAGATTTTGCAAGTTCTTCGACAGTGCAGTTCAAGTTCTGCACGTAA 1386 0.4055 QLTTLHLDGNQLSGTLPSEIISWQSLDTLTISRNKISGQIPVAMSSLPKLVYLDLSENNISGEIPPQLVKLNFIFLNLSSNKLTGSIPDEIDNLAYETSFLNNPQLCTHNENLNLSSCLAKTTPHSRKNSSLKSKLVALILAVTVAVLLATTFLAFCMLKKRCGKKHCGPKLSTWRLTSFQRLDLTEINIFSSLTDNNLIGSGGFGKVYRIASTRPGEYVAVKKIWNVKDVDDKLDKEFMAEVEILGNIRHSNIVKLLCCFSSETTKLLVYEYMENHSLDKWLHTKKIKTSVSGLSSHAENQLVLSWPTRLNIAIGAAQGLCYMHHECSMPIIHRDVKSSNILLDSEFKASIADFGLAKMLAKNGEPYTASVLAGSFGYIPPEYAYSTRIDEKVDVYSFGVVLLELVTGRXPNNGGDNACSLVDWAWQHCNEGKCITDAFDEAFHKGDFASSSTVQFKFCT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13429g00001 461 Pfam Protein kinase domain 196 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13429g00001 461 FunFam Receptor-like protein kinase HSL1 174 273 - -
Trme13429g00001 461 Pfam Leucine rich repeat 1 60 IPR001611 GO:0005515
Trme13429g00001 461 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 444 - -
Trme13429g00001 461 SMART serkin_6 194 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13429g00001 461 SUPERFAMILY L domain-like 2 126 - -
Trme13429g00001 461 ProSitePatterns Protein kinases ATP-binding region signature. 200 224 IPR017441 GO:0005524
Trme13429g00001 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 332 344 IPR008271 GO:0004672|GO:0006468
Trme13429g00001 461 Gene3D Phosphorylase Kinase; domain 1 176 273 - -
Trme13429g00001 461 Gene3D Transferase(Phosphotransferase) domain 1 274 457 - -
Trme13429g00001 461 ProSiteProfiles Protein kinase domain profile. 194 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13429g00001 461 FunFam - 233 426 - -
Trme13429g00001 461 SUPERFAMILY Protein kinase-like (PK-like) 185 422 IPR011009 -
Trme13429g00001 461 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 115 - -
Trme13429g00001 461 Gene3D Ribonuclease Inhibitor 1 128 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13429g00001 Trme-Chr13429 1 1557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13429g00001 2 95 Receptor kinase-like Gene Family AT5G25930 29.167 2.43e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme13429g00001 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13429g00001 - - gmx:100782466 642.114