Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme134092g00001 ATGTCCAAAATTGAAAAACATCAACCCTTGTTGAAGTGCTTCAGCTATGAAAACATATCAAATGCTACTAATGAATTTCACCAAGATAATTTGGTTGGAAGAGGAGGCTACTCAGAAGTATACAAAGGTGTTCTTTGTGATGGAGAAACCATTGCTGTGAAGAGATTAGCCAAAGACAACAATGATCCAAACAAGGAAAAAGAGTTCCTTATGGAGTTAGGTGTTATTGGACATGTCTGTCATGCTAATACTGCAACTTTATTGGGCTATTGCATTGAAAATGGGCTTTATCTGATTTTCAATTACTCTCAAAATGGAAATTTGTCAACTGCATTGCATGGTTATGGTGAGGAAGCCTTATACACCTAA 369 0.3631 MSKIEKHQPLLKCFSYENISNATNEFHQDNLVGRGGYSEVYKGVLCDGETIAVKRLAKDNNDPNKEKEFLMELGVIGHVCHANTATLLGYCIENGLYLIFNYSQNGNLSTALHGYGEEALYT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme134092g00001 122 SUPERFAMILY Protein kinase-like (PK-like) 12 115 IPR011009 -
Trme134092g00001 122 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Trme134092g00001 122 ProSiteProfiles Protein kinase domain profile. 26 122 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme134092g00001 122 Gene3D Phosphorylase Kinase; domain 1 1 102 - -
Trme134092g00001 122 PANTHER OS08G0249100 PROTEIN 3 119 IPR046958 -
Trme134092g00001 122 FunFam Putative receptor-like serine/threonine-protein kinase 1 102 - -
Trme134092g00001 122 Pfam Protein kinase domain 26 113 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme134092g00001 Trme-Chr134092 22 484 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme134092g00001 14 121 Receptor kinase-like Gene Family AT1G53430 42.202 2.04e-21 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme134092g00001 Pkinase 1.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme134092g00001 - - gmx:100782832 208.764