Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme133837g00001 ACCGATCTCGCTCATGGACTCGATTACATTCATAATAAAACTGGTTTGAATTTCAATTTTGTTCATAATCATATCAAGAGTAGCGCGATCGTTGTTACCGAACCTGATTTCAATGCTAGGGTTTGTCATTTCGGTGCGGCACAGCTTTGCGGTGAAGCCGTTGAGGAAAACGAAATTGCGACTAAACAATTGGGGGAAATCACGGAGGAAGGTAGATCGAAGGAATTGAGAAGCTCCGACGTGCAATTCGAAGGTGTTCGGGGGTATATGTCGCCGGAATTTCAATCTACCGGCGTWGCGACTCAGAAGAGTGATGTTTATGCTTTTGGAGTGGTGATGTTGGAGCTTTTATCCGGAGAGGAACCGTTGAAGTTTAAATTTGATGAGAAGAGGCGTGATTTTGTGAGAATTTCGGTGATTGAATCGGCGAGAGCCGCCGTGGACGGCGGCGATGGGAGTGTGGAAGGGAAGCTGAGAATGTGGGTTGATAGGAGATTGAAAGATTCTTTTCCGGTTGATGTTGCTGAGAAATTGACACGTGTAGCGTTGGATTGTGTACACGTGGATCCAGATAAGAGGCCTAATAT 587 0.4566 TDLAHGLDYIHNKTGLNFNFVHNHIKSSAIVVTEPDFNARVCHFGAAQLCGEAVEENEIATKQLGEITEEGRSKELRSSDVQFEGVRGYMSPEFQSTGVATQKSDVYAFGVVMLELLSGEEPLKFKFDEKRRDFVRISVIESARAAVDGGDGSVEGKLRMWVDRRLKDSFPVDVAEKLTRVALDCVHVDPDKRPN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme133837g00001 195 Gene3D Transferase(Phosphotransferase) domain 1 1 195 - -
Trme133837g00001 195 SUPERFAMILY Protein kinase-like (PK-like) 2 195 IPR011009 -
Trme133837g00001 195 Coils Coil 195 195 - -
Trme133837g00001 195 PANTHER OS09G0572100 PROTEIN 1 195 - -
Trme133837g00001 195 ProSiteProfiles Protein kinase domain profile. 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme133837g00001 195 Pfam Protein kinase domain 3 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme133837g00001 Trme-Chr133837 1 587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme133837g00001 2 195 Receptor kinase-like Gene Family AT1G51940 32.836 2.91e-22 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme133837g00001 Pkinase 2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme133837g00001 - - vvo:131653853 362.073