Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme133682g00001 | ATGCGTACCTATAAGAATGCTAGAGGAGAAGGGTGTGTATTCAATGTTGAATTGACTGATGAAGATGGTACTCAGATTCAAGCAACTATGTTTAATGATGCTGCGAGGAAGTTTTTTGACAAATTTGTTATGGGAAAGGTTTATTATATTTCAAAGGGTACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGGCAAATGATTATGAGATGACACTGAAYGAGAATTCTGAGGTGGAAGARGTTCCTGAAGAAGCTGGRTTTGTTCCAGAGACGAAATTCAATTTTGTCCCAATTGATCAATTGGGTCCTCATGTCAATAAGCCTGACCTTGTTGATGTTGTTGGAGTTGTTAAGAATGTGTC | 365 | 0.3699 | MRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFFDKFVMGKVYYISKGTLKVANKQFKTVANDYEMTLNENSEVEEVPEEAGFVPETKFNFVPIDQLGPHVNKPDLVDVVGVVKNVS | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme133682g00001 | 122 | CDD | RPA1_DBD_A | 1 | 81 | - | - | |
| Trme133682g00001 | 122 | SUPERFAMILY | Nucleic acid-binding proteins | 2 | 86 | IPR012340 | - | |
| Trme133682g00001 | 122 | Gene3D | - | 89 | 122 | IPR012340 | - | |
| Trme133682g00001 | 122 | FunFam | Replication protein A subunit | 1 | 84 | - | - | |
| Trme133682g00001 | 122 | Gene3D | - | 1 | 84 | IPR012340 | - | |
| Trme133682g00001 | 122 | Pfam | OB-fold nucleic acid binding domain | 7 | 70 | IPR004365 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme133682g00001 | Trme-Chr133682 | 1 | 557 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme133682g00001 | 1 | 122 | Core DNA Replication Machinery Family | AT5G08020 | 80.328 | 9.38e-68 | 212 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme133682g00001 | K07466 | - | gmx:100777091 | 182.57 |