Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1336202g00001 ATGAAGGAAGAAGAACTATGCGAGGCGGCGATTAAGGGTGACACGGAGAAGGTAACCGCTCTTATCGACTCCGGCGCCGACGTTACCCATTTCGACGCCGATGGCCTCACTCCTCTTATGCACGCCGCAAAGCACGGCCATGCACCGATCCTCGACATCCTTCTCACCGCCGGTGCCCCTTGGAACGCTCTTTCTCCC 198 0.5859 MKEEELCEAAIKGDTEKVTALIDSGADVTHFDADGLTPLMHAAKHGHAPILDILLTAGAPWNALSP 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1336202g00001 66 SMART ANK_2a 34 63 IPR002110 GO:0005515
Trme1336202g00001 66 SMART ANK_2a 1 30 IPR002110 GO:0005515
Trme1336202g00001 66 ProSiteProfiles Ankyrin repeat profile. 34 66 IPR002110 GO:0005515
Trme1336202g00001 66 Pfam Ankyrin repeats (many copies) 6 55 IPR002110 GO:0005515
Trme1336202g00001 66 PANTHER MYOTROPHIN 6 63 - -
Trme1336202g00001 66 SUPERFAMILY Ankyrin repeat 3 64 IPR036770 -
Trme1336202g00001 66 Gene3D - 1 65 IPR036770 -
Trme1336202g00001 66 ProSiteProfiles Ankyrin repeat region circular profile. 34 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1336202g00001 Trme-Chr1336202 8 205 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1336202g00001 5 63 MAP Kinase Kinase Kinase AT2G31800 42.373 1.28e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1336202g00001 K18477 - gmx:100527621 114.775