Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme133352g00001 ATGGAAAGGAATCATGGATGTTCCCAAGACTGTAAAGTTTTAGAGACAATAAAGAAGGCAAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCATTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCCAAAACTGGGTCAGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTCTTATG 243 0.4239 MERNHGCSQDCKVLETIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLLM 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme133352g00001 81 PANTHER RNA HELICASE 12 71 - -
Trme133352g00001 81 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 71 IPR027417 -
Trme133352g00001 81 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 33 81 IPR014001 -
Trme133352g00001 81 Pfam DEAD/DEAH box helicase 27 66 IPR011545 GO:0003676|GO:0005524
Trme133352g00001 81 Gene3D - 5 81 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme133352g00001 Trme-Chr133352 238 480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme133352g00001 12 73 Eukaryotic Initiation Factors Gene Family AT5G11200 37.097 1.88e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme133352g00001 K12811 - gmx:100806467 139.043