Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme133340g00001 ATGGACCCTGGGAAGCTATTCATTGGAGGGATTTCCTGGGACACAAATGAAGATCGACTCAGATCGTATTTCCAGAACTTTGGAGATGTAGTTGAAGCTGTGATTATGAAGGATCGTACCACCGGACGTGCCCGTGGTTTTGGATTTGTTGTTTTTTCTGATCCTTCTGTTGCCGAACGAGTTGTTATGGAAAAACATGTCATAGATGGTAGAACT 216 0.4352 MDPGKLFIGGISWDTNEDRLRSYFQNFGDVVEAVIMKDRTTGRARGFGFVVFSDPSVAERVVMEKHVIDGRT 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme133340g00001 72 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 63 IPR000504 GO:0003723
Trme133340g00001 72 SUPERFAMILY RNA-binding domain, RBD 3 71 IPR035979 GO:0003676
Trme133340g00001 72 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 72 IPR000504 GO:0003723
Trme133340g00001 72 SMART rrm1_1 5 72 IPR000504 GO:0003723
Trme133340g00001 72 Gene3D - 3 72 IPR012677 -
Trme133340g00001 72 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 72 - -
Trme133340g00001 72 FunFam Heterogeneous nuclear ribonucleoprotein 1 3 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme133340g00001 Trme-Chr133340 353 568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme133340g00001 6 52 C2H2 Transcription Factor Family AT2G19380 38.298 2.31e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme133340g00001 K14411 - egr:104445614 137.117