Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme133239g00001 CCTAATGTAGTAGTTGCGAAAGATGGGTCGGGAAAGTACATGACAGTTGGTGCAGCAGTGAATGCTGCACCAAAGAATAATAATGGAAGGTATGTTATACATGTGAAGGCTGGTGTTTACAATGAACAAGTTGAGATCAAAGCAAAGAATATTATGTTGGTGGGAGATGGTATTGGAAAGACTATAATCACCGGTAGTAAAAGTGTTGGGGGAGGAACCACAACATTCCGTTCTGCCACAGTTGGTANGTAA 252 0.4127 PNVVVAKDGSGKYMTVGAAVNAAPKNNNGRYVIHVKAGVYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGX 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme133239g00001 83 PANTHER PECTINESTERASE 1 82 - -
Trme133239g00001 83 Pfam Pectinesterase 2 82 IPR000070 GO:0030599|GO:0042545
Trme133239g00001 83 SUPERFAMILY Pectin lyase-like 2 81 IPR011050 -
Trme133239g00001 83 Gene3D - 1 83 IPR012334 -
Trme133239g00001 83 ProSitePatterns Pectinesterase signature 1. 27 46 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme133239g00001 Trme-Chr133239 3 254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme133239g00001 2 82 Carbohydrate Esterase AT2G45220 67.901 1.49e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme133239g00001 K01051 - gmx:100793904 135.961