Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13315g00001 ATGATTACATTGAATTATGTCATTTTCTCAAATTATTATCGGTGTCGACGTGTCAGTGTCTTGTCTGGTGCTGGATTTGCCGGAGATGATGCACCGAGGGCTGTGTTTCCTAGCATTGTTGGTCGTCCACGCCACACCGGTGTGATGGTTGGTATGGGACAAAAGGATGCATATGTTGGTGATGAAGCTCAATCGAAAAGGGGTATTTTGACTCTAAAGTATCCAATTGAACATGGAATAGTTAGTAACTGGGATGATATGGAAAAGATCTGGCATCATACTTTCTACAATGAGTTGCGTGTGGCTCCGGAAGAACATCCTGTTCTTCTCACTGAAGCACCGCTTAATCCTAAGGCTAATCGTGAGAAAATGACTCAGATTATGTTTGAGACCTTCAACACTCCAGCTATGTATGTTGCTATTCAGGCCGTGCTTTCACTTTATGCGAGTGGTCGTACAACCGGTAAAGATTCTTATCTGTTTTCCTTTTCATAA 495 0.4242 MITLNYVIFSNYYRCRRVSVLSGAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGKDSYLFSFS 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13315g00001 164 PANTHER ACTIN 22 155 IPR004000 -
Trme13315g00001 164 CDD NBD_sugar-kinase_HSP70_actin 79 158 - -
Trme13315g00001 164 PRINTS Actin signature 145 164 IPR004000 -
Trme13315g00001 164 PRINTS Actin signature 120 133 IPR004000 -
Trme13315g00001 164 PRINTS Actin signature 31 40 IPR004000 -
Trme13315g00001 164 PRINTS Actin signature 54 65 IPR004000 -
Trme13315g00001 164 PRINTS Actin signature 66 88 IPR004000 -
Trme13315g00001 164 SMART actin_3 18 163 IPR004000 -
Trme13315g00001 164 ProSitePatterns Actins signature 1. 58 68 IPR004001 -
Trme13315g00001 164 ProSitePatterns Actins and actin-related proteins signature. 109 121 IPR020902 -
Trme13315g00001 164 FunFam Actin, alpha skeletal muscle 11 157 - -
Trme13315g00001 164 SUPERFAMILY Actin-like ATPase domain 24 151 IPR043129 -
Trme13315g00001 164 FunFam Actin, alpha skeletal muscle 39 76 - -
Trme13315g00001 164 Gene3D Actin; Chain A, domain 2 39 76 - -
Trme13315g00001 164 Gene3D - 10 159 - -
Trme13315g00001 164 Pfam Actin 24 155 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13315g00001 Trme-Chr13315 799 1404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13315g00001 15 155 Cytoskeleton Gene Families AT3G12110 94.326 5.09e-97 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13315g00001 K10355 - aew:130793480 273.863