Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13311g00001 ATGCTTTATTTGTTCCCTTCTGTGTCATGCTTAACATCGGTCTGGTTTACTGTTGAATCAGGGTGGAATAAAATATCATTTGTTCGACTTGATGGGACTTTGAATTTGCAGCAGCGTGAAAAAGTTATCAAACAATTCTCAGAAGACAGCGACATACAGGTGTTGTTGATGTCGCTAAAAGCTGGCGGAGTGGGTATAAATCTAACAGCAGCTTCCAATGCTTTTGTCATGGACCCRTGGTGGAATCCAGCTGTTGAAGAACAAGCTGTTATGCGCATTCATCGCATTGGACAAACAAAGAAGGTGGCCATCAAACGGTTTATTGTGAAG 330 0.4182 MLYLFPSVSCLTSVWFTVESGWNKISFVRLDGTLNLQQREKVIKQFSEDSDIQVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13311g00001 110 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 110 IPR001650 -
Trme13311g00001 110 Pfam Helicase conserved C-terminal domain 23 97 IPR001650 -
Trme13311g00001 110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 109 IPR027417 -
Trme13311g00001 110 CDD SF2_C_SNF 22 108 - -
Trme13311g00001 110 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 23 110 - -
Trme13311g00001 110 Gene3D - 9 110 IPR027417 -
Trme13311g00001 110 SMART helicmild6 14 97 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13311g00001 Trme-Chr13311 285 1528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13311g00001 23 110 RAD5 or RAD16-like Gene Family AT5G22750 86.364 4.07e-47 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13311g00001 K15505 - gmx:100794558 164.851