Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13309g00001 GGACTAGTCTTTGCAGTTATTACTTTTACAGTTTTGGTTAAAGGACACTTGGGCCGCAAAATCCGCGAAGGAAGATTCTGGAGATGGTCTGGTGATGATGCAATGGAGATGTTGGAATACTTCGCTATTGCGGTTACTATTGTTGTCGTTGCGGTTCCAGAGGGGTTACCATTAGCTGTGACATTGAGTCTTGCATTCGCAATGAAGAAGATGATGAATGATAAAGCCTTGGTTAGGCATTTAGCAGCTTGTGAAACTATGGGATCAGCCACAACTATATGTAGTGACAAGACCGGTACACTAACAACCAACCGAATGACGGTTGTGAAAACATGCATTTGTATGAATAGCAAAGAAGTGAACAATAATGATTCAAGTTTGTCGTCCGAACTACCAGATTCTGCTACAAAACTGTTGCTACAGTCGATATTTAATAACACGGGAGGAGAGGTTGTGCATAACAGAAAAGGTAAACGCGAGATATTAGGGACGCCGACCGAATCAGCAATATTGGAATTTGGGTTGTCACTAGGTGGTGATTCTAAGGCTGAGAGAAAAGCTTGCAAAATTGTTAAAGTTGAGCCGTTCAACTCTGAGAAGAAAAGAATGGGAGTAGTTGTGGAGCTACCAGATGGAGGTTTAAGAGCTCATTGCAAAGGTGCTTCTGAAATAATTCTTGCTGCTTGTGACAAAGTTATTGGCTCAAACGGCGATGTTGTTGCTCTTGATGGAGAATCGATTAATTATCTTAACAGTATTATTAACCAGTTTGCTAATGAAGCACTTAGAACTCTTTGCCTTGCCTATATGGAAATKGWAAACGGATTTTCTGCCAATGATCCGATTCCTGCTTCTGGATACACTTGTATTGGAATTGTCGGTATCAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCGGTTGCCGTGTGTCGTTCAGCTGGAATTGTGGTGAGAATGGTTACAGGAGACAATATTAATACTGCAAAGGCTATAGCTAGGGAATGTGGAATTTTAACAGATGATGGCATAGCTATTGAAGGTCCTGACTTCAGAGAGAAGACTCAGGAGGAAATGTTTGAACTTATTCCAAAAATTCAGGTTATGGCTAGATCATCACCTTTAGACAAACATACATTGGTGAAACAGCTTCGCACGACGTTCGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCCGACATCGGACTTGCAATGGGAATTGCTGGAACTGAGGAATTGGGGAAGATAGAATTCTGGTAA 1284 0.4182 GLVFAVITFTVLVKGHLGRKIREGRFWRWSGDDAMEMLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNRMTVVKTCICMNSKEVNNNDSSLSSELPDSATKLLLQSIFNNTGGEVVHNRKGKREILGTPTESAILEFGLSLGGDSKAERKACKIVKVEPFNSEKKRMGVVVELPDGGLRAHCKGASEIILAACDKVIGSNGDVVALDGESINYLNSIINQFANEALRTLCLAYMEXXNGFSANDPIPASGYTCIGIVGIKDPVRPGVKESVAVCRSAGIVVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEEMFELIPKIQVMARSSPLDKHTLVKQLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEELGKIEFW 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13309g00001 427 Gene3D - 291 423 IPR023214 -
Trme13309g00001 427 PRINTS P-type cation-transporting ATPase superfamily signature 94 108 - -
Trme13309g00001 427 PRINTS P-type cation-transporting ATPase superfamily signature 291 302 - -
Trme13309g00001 427 PRINTS P-type cation-transporting ATPase superfamily signature 313 323 - -
Trme13309g00001 427 PRINTS P-type cation-transporting ATPase superfamily signature 394 413 - -
Trme13309g00001 427 NCBIfam HAD-IC family P-type ATPase 186 339 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme13309g00001 427 NCBIfam HAD-IC family P-type ATPase 35 127 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme13309g00001 427 PANTHER CATION TRANSPORTING ATPASE 1 419 - -
Trme13309g00001 427 Gene3D - 1 119 - -
Trme13309g00001 427 ProSitePatterns E1-E2 ATPases phosphorylation site. 96 102 IPR018303 -
Trme13309g00001 427 SUPERFAMILY HAD-like 82 421 IPR036412 -
Trme13309g00001 427 Pfam Cation transport ATPase (P-type) 153 232 - -
Trme13309g00001 427 SUPERFAMILY Calcium ATPase, transmembrane domain M 38 88 IPR023298 -
Trme13309g00001 427 FunFam Calcium-transporting ATPase 104 298 - -
Trme13309g00001 427 FunFam copper-transporting ATPase 1 isoform X2 293 338 - -
Trme13309g00001 427 SFLD Haloacid Dehalogenase 76 419 - -
Trme13309g00001 427 Gene3D - 150 290 IPR023299 GO:0000166
Trme13309g00001 427 PRINTS Sodium/potassium-transporting ATPase signature 216 234 - -
Trme13309g00001 427 PRINTS Sodium/potassium-transporting ATPase signature 87 108 - -
Trme13309g00001 427 SFLD p-type atpase 76 419 IPR044492 -
Trme13309g00001 427 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 100 303 IPR023299 GO:0000166
Trme13309g00001 427 Pfam E1-E2 ATPase 5 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13309g00001 Trme-Chr13309 1 1486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13309g00001 1 419 Primary Pumps ATPases AT4G37640 80.952 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13309g00001 K01537 - gmx:100776926 739.184