Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme133050g00001 ATGGTATCAGAGTCCATTGTTGATTGTGTCACGCTTCAAATGTCTGGTCCTGAACGAGATGTGTTTAAAGATCTTGTTGGGAGTGCCTATTACGTTGCTCCTGAAGTGCTGCGTAGAAGTTATGGGCCTGAAACTGATATTTGGAGTGCCGGGATTATATTATACATTCTGCTTTCTGGTGTACCCCCCTTCTGGGCAG 199 0.4523 MVSESIVDCVTLQMSGPERDVFKDLVGSAYYVAPEVLRRSYGPETDIWSAGIILYILLSGVPPFWA 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme133050g00001 66 PANTHER SERINE/THREONINE-PROTEIN KINASE 18 65 - -
Trme133050g00001 66 Gene3D Transferase(Phosphotransferase) domain 1 4 66 - -
Trme133050g00001 66 ProSiteProfiles Protein kinase domain profile. 1 66 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme133050g00001 66 SUPERFAMILY Protein kinase-like (PK-like) 19 65 IPR011009 -
Trme133050g00001 66 Pfam Protein kinase domain 19 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme133050g00001 Trme-Chr133050 98 459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme133050g00001 20 66 EF-hand Containing Proteins AT4G23650 87.234 2.45e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme133050g00001 Pkinase 1.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme133050g00001 K13412 - gmx:100777096 97.4413