Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme133020g00001 ATGACATTTCTGATTATTGGATCAGTTGGTGCTTTTGCTGGTTTATGCACTATTCTTTATTTTGTTATAATTGGTTCTAGAAGATTGTTAAAGGCGAAAATCGATAATTCAGTTCAACCTACAAGTAGTGAATCTGATGATGCTTATGTTGATATAGCTCCAATGCAAAATGTTGCTAGTGACAATTTCTCAATGGAAAACAAAATCGGTTCCGGTAGTTTCGGGTGTGTTTACAAAGGTAGACTAATCGACGGTCGTGAAGTTGCGATTAAGCGAGGCGATACTTGCTTGAGGAAGAAGAAATTTCAAGAAAAAGAAACTGCTTTTGATTCTGAGTTAACTTTGTTGTCAAGGCTTCATCATAAGCATTTG 372 0.3602 MTFLIIGSVGAFAGLCTILYFVIIGSRRLLKAKIDNSVQPTSSESDDAYVDIAPMQNVASDNFSMENKIGSGSFGCVYKGRLIDGREVAIKRGDTCLRKKKFQEKETAFDSELTLLSRLHHKHL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme133020g00001 124 Gene3D Phosphorylase Kinase; domain 1 42 124 - -
Trme133020g00001 124 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 58 124 IPR044815 GO:0004674
Trme133020g00001 124 ProSiteProfiles Protein kinase domain profile. 63 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme133020g00001 124 ProSitePatterns Protein kinases ATP-binding region signature. 69 91 IPR017441 GO:0005524
Trme133020g00001 124 SUPERFAMILY Protein kinase-like (PK-like) 49 124 IPR011009 -
Trme133020g00001 124 Pfam Protein tyrosine and serine/threonine kinase 64 124 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme133020g00001 Trme-Chr133020 13 522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme133020g00001 1 124 Receptor kinase-like Gene Family AT3G55950 46.626 1.40e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Trme133020g00001 PK_Tyr_Ser-Thr 7.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme133020g00001 - - gmx:100776682 154.836