Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132981g00001 TGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGATGAATTTGTAGCAGTTGTTGGAGATTTCGGTTTAGCAAGGGTTATGAATTACAAAGACACTCATGTTACTACTGCTGTTCGTGGTACGCTTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAGTCTTCAGAAAAGACCGATGTTTTTGGATATGGTGTGACACTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATCTTGCACGTCTTGCCAGTGATGATGATGTGATGTTACTTGATTGGGTAGTTCTGCCTCCAACACCGTGGCATGCGTTTGACATTGTTTTGAATCCAGGTTAA 360 0.4139 CDPKIIHRDVKAANILLDDEFVAVVGDFGLARVMNYKDTHVTTAVRGTLGHIAPEYLSTGKSSEKTDVFGYGVTLLELITGQRAFDLARLASDDDVMLLDWVVLPPTPWHAFDIVLNPG 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132981g00001 119 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 96 - -
Trme132981g00001 119 SUPERFAMILY Protein kinase-like (PK-like) 2 110 IPR011009 -
Trme132981g00001 119 ProSitePatterns Serine/Threonine protein kinases active-site signature. 5 17 IPR008271 GO:0004672|GO:0006468
Trme132981g00001 119 Pfam Protein kinase domain 4 86 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme132981g00001 119 ProSiteProfiles Protein kinase domain profile. 1 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme132981g00001 119 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132981g00001 Trme-Chr132981 3 440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132981g00001 1 102 Receptor kinase-like Gene Family AT1G34210 92.157 1.12e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trme132981g00001 Pkinase 7.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132981g00001 K13416 K13418 zof:122021889 187.963