Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132922g00001 ATGATGTCAGTTCCACCTAGCATAGGATCTCCACATTCTTGGCTTAAAGAACTGAAATCTGAAGAAAGGGGTTTGTATTTGATCCATTTGTTACTCACTTGTGCAAATCATGTAGCTGATTGTAATCTTGAGAATGCAAATGCAACACTTGAGCAAATTTCCATGCTTGCTTCCCCTGACGGCGACACCATGCAGCGAATTGCAGCTTATTTTACTGAAGCACTTGCTGATAGGATACTCAAAGCATGGCCTGGTCTCCACAAAGCACTTAACTCTACTAGAATGGTTATGGTTTCAGAAGAGATTCTTGTGCAGAAGCTCTTTTTTGAGCTTTTCCCTTTCTTGAAGGTAGCTTATATTCTTACAAATCAAGCTATCGTTGAAGCGATGGAAGGGGAGAAAATGATTCACATAATTGATCTCAATGCTGCTGAACCTGCTCAATGGATTGCACTCTTACAAGTTTTGAGCACGCGTCCCGAAGGTCCTCCGCATTTGAGAATCACCAGCGTTCATCCAAAGAAAGAAGTTCTCGACAAGATTGCTCATAGGCTGATTGAAGAAGCTGAAAGGTTGGATAT 581 0.4165 MMSVPPSIGSPHSWLKELKSEERGLYLIHLLLTCANHVADCNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTRMVMVSEEILVQKLFFELFPFLKVAYILTNQAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSTRPEGPPHLRITSVHPKKEVLDKIAHRLIEEAERLD 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132922g00001 193 Pfam GRAS domain family 27 192 IPR005202 -
Trme132922g00001 193 ProSiteProfiles GRAS family profile. 18 193 IPR005202 -
Trme132922g00001 193 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 23 193 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132922g00001 Trme-Chr132922 10 590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132922g00001 10 193 GRAS Transcription Factor Family AT1G50420 75.269 9.69e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme132922g00001 GRAS 2.3e-59 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132922g00001 - - cave:132164091 334.724