Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132890g00001 ATGGCAATGACAGGGAAGTTGTTTGAAGCTCAATCATTAAACAAGGAAGCTTTTATTTCGTACTCAATCTCATTGTCAATAGAACCTGATTATATTCCCAGTATCAATTCAACTGCAAAGTTGTTGATTAAACTTGGTATGCAATCACTTCCATTGGCAAGAAGCTTTTTAATGAATGCTTTACGATTGGAACCTACAAACCAGGACGCGTGGTTCAATCTTGGATTGGTTTCAAAAATGGAAGGTTCGTTACAACAAGCAGCAGATTGCTTTCAAGCTGCATATGAGCTGGCGCTTTCAACTCCAGTGCAAAAATTTGAGTGA 324 0.3827 MAMTGKLFEAQSLNKEAFISYSISLSIEPDYIPSINSTAKLLIKLGMQSLPLARSFLMNALRLEPTNQDAWFNLGLVSKMEGSLQQAADCFQAAYELALSTPVQKFE 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132890g00001 107 Gene3D Tetratricopeptide repeat domain 2 105 IPR011990 GO:0005515
Trme132890g00001 107 PANTHER PROTEIN NPG1 2 107 IPR043376 -
Trme132890g00001 107 SUPERFAMILY TPR-like 5 97 IPR011990 GO:0005515
Trme132890g00001 107 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132890g00001 Trme-Chr132890 16 339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132890g00001 4 106 Calmodulin-binding Proteins AT1G27460 61.165 6.93e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132890g00001 K21843 - gmx:100799086 185.267