Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13286g00001 ATGGAAACCCAAGCTCCATCAATGGAGAATCCCAAAATATCAGCCTATTACCAGACGAGACTAGCGCACTTCGGCGTCGTCAGTACCGAGTGGTTAGCTCAGGCTCAATCCGCAACAAACCCTCTCCCATCATCATCAACCGATTCAGACACTGATAAAGATACCAATTTCTCTGTAATCGATGAATTCAACCGGTGGCGTAATCATCCCGATTTGGCGGAAGCTGTCGCCGCAATTCGTGCCCTTGCTGCTGTTATCAGCTCTAGCAAAGCTTCTACTATGATGCAACTTGAAATTGAACTCAAAAATGCCTCTGATACTCTTAAAGCATGGGATACAACCTCTATCTCATTGACAGCGGCATCTGATCTGTTTATGAGATACGTGACAAGGACCTCTGCTTTGGAATTTGAAGACTTCAATTCTGCTAAATCTCGCTTGATTGAGCGTGCTGACAAGTTTGGGGAAATTTCCTACAAG 480 0.45 METQAPSMENPKISAYYQTRLAHFGVVSTEWLAQAQSATNPLPSSSTDSDTDKDTNFSVIDEFNRWRNHPDLAEAVAAIRALAAVISSSKASTMMQLEIELKNASDTLKAWDTTSISLTAASDLFMRYVTRTSALEFEDFNSAKSRLIERADKFGEISYK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13286g00001 160 Coils Coil 94 114 - -
Trme13286g00001 160 Gene3D - 54 157 IPR042528 -
Trme13286g00001 160 SUPERFAMILY NagB/RpiA/CoA transferase-like 55 154 IPR037171 -
Trme13286g00001 160 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 25 160 - -
Trme13286g00001 160 FunFam Translation initiation factor eIF-2B subunit alpha 55 157 - -
Trme13286g00001 160 Pfam Initiation factor 2 subunit family 70 154 IPR000649 GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13286g00001 Trme-Chr13286 100 1564 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13286g00001 3 160 Eukaryotic Initiation Factors Gene Family AT1G72340 66.871 3.00e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13286g00001 K03239 - gmx:102669842 219.55