Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132758g00001 ATGAGCAATGGTTCACTTGGAAAGCTTCTGTTTGGTGGTCAAAGACGTCCGGGTTGGGATGAAAGAGTAAGAATAGCACTGGACATTGCTAGAGGGATCTCGTATCTCCATGGAGAGTGTGAGGCACCAATCATTCATTGTGACATAAAGCCTCAAAATATTTTGATGGATGMRTTTTGGACYGCYAAGATATCTGATTTTGGTYTTGCAAAACTTYTAATGCCTGACCAAACCAGAACTTTCACWGTGATTAGAGGGACAAGAGGCTACATGGCTCCRGARTGGAACAAGAACACCCCAATATCACTGAAGGCAGATGTTTATAGCTATGGAATAATGCTGTTGGAGATTCTATGTTGCAGAAGAAACCTAGATGTTAATGTGTTGGAACCTGAGGAGATTCTTCTCTCTGGTTGGGCTTATAAGTGCTTTACTGCAGGAGAGGTAAATAAGCTTGTTCCTTGGGAAGTCATTGATAACAATGTCATGGAAAACATGTTTAAGGCGGCACTTTGGTGTATCCAAGACGACCCTTTTCTCAGGCCAACAATGAAGGGTGTGGTGTTGATGTTAG 574 0.4181 MSNGSLGKLLFGGQRRPGWDERVRIALDIARGISYLHGECEAPIIHCDIKPQNILMDXFWTAKISDFGXAKLLMPDQTRTFTVIRGTRGYMAPEWNKNTPISLKADVYSYGIMLLEILCCRRNLDVNVLEPEEILLSGWAYKCFTAGEVNKLVPWEVIDNNVMENMFKAALWCIQDDPFLRPTMKGVVLML 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132758g00001 191 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 191 - -
Trme132758g00001 191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme132758g00001 191 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 191 - -
Trme132758g00001 191 Gene3D Transferase(Phosphotransferase) domain 1 1 191 - -
Trme132758g00001 191 SUPERFAMILY Protein kinase-like (PK-like) 1 191 IPR011009 -
Trme132758g00001 191 ProSiteProfiles Protein kinase domain profile. 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme132758g00001 191 SMART serkin_6 1 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme132758g00001 191 Pfam Protein kinase domain 21 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132758g00001 Trme-Chr132758 17 590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132758g00001 18 191 Receptor kinase-like Gene Family AT5G20050 36.957 3.78e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trme132758g00001 Pkinase 2.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132758g00001 - - adu:107470047 339.347