Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132711g00001 ATTGCTCCACAAAAAGCAGTGATAGCTGAAACAGGAGAGGTTGTAGATGTTGATGAGGTGAAAGTAAACACAGTTTTAGCAGTTAAAGCAGGAGAGGTTATACCTATTGATGGAGTTGTTTTAGATGGTAACTGTGAAGTTGATGAGAAAACATTGACTGGGGAATCATTCCCTGTAGCCAAACAAAAAGATTCTACTGTATGGGCTGGCACAATCAATTTAAATGGTAAATTTCTAGTCTCCAATGGCACAAGAGTTAGACACTATGAAGCACGGACACAGACACGGGTAACAGGCACGACACGGATACTGACACATCAATACCGATAA 330 0.4061 IAPQKAVIAETGEVVDVDEVKVNTVLAVKAGEVIPIDGVVLDGNCEVDEKTLTGESFPVAKQKDSTVWAGTINLNGKFLVSNGTRVRHYEARTQTRVTGTTRILTHQYR 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132711g00001 109 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 80 - -
Trme132711g00001 109 Pfam E1-E2 ATPase 9 80 - -
Trme132711g00001 109 Gene3D - 1 104 - -
Trme132711g00001 109 SUPERFAMILY Calcium ATPase, transduction domain A 13 79 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132711g00001 Trme-Chr132711 1 330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132711g00001 1 81 Primary Pumps ATPases AT4G30110 81.481 6.62e-39 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132711g00001 K01534 - mesc:110616344 140.584