Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132624g00001 GGAAATAGTAAAAGTGGAAATTGTGCAAACACAAGCAACAATTTCATGCCATTTGGAGGAGGACCAAGGCTATGTGCAGGATTAGAGTTAGCTAAACTTGAAATGGCTGTTTTCATTCACCATATTATCCTCAACTACAATTGGAACCTTGTCGATGTTGATCAACCTATTGTATACCCTTTTGTTGATTTTCCTAAAGGTTTACCTATCAGAGTCCAAAGCCAATGCCACTCTTTAATATGA 243 0.3745 GNSKSGNCANTSNNFMPFGGGPRLCAGLELAKLEMAVFIHHIILNYNWNLVDVDQPIVYPFVDFPKGLPIRVQSQCHSLI 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132624g00001 80 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 18 27 IPR017972 GO:0005506|GO:0016705
Trme132624g00001 80 PANTHER CYTOCHROME P450 26 12 56 - -
Trme132624g00001 80 PRINTS E-class P450 group I signature 25 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme132624g00001 80 PRINTS E-class P450 group I signature 15 25 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme132624g00001 80 SUPERFAMILY Cytochrome P450 10 72 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme132624g00001 80 Pfam Cytochrome P450 4 56 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme132624g00001 80 Gene3D Cytochrome P450 1 77 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme132624g00001 80 FunFam Ent-kaurenoic acid oxidase 1 14 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132624g00001 Trme-Chr132624 337 579 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132624g00001 12 72 Cytochrome P450 AT1G55940 49.180 2.72e-16 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132624g00001 K09587 - gmx:100802498 122.094