Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132584g00001 AAATCAGATGTGTACTCATTTGGTGTGGTTTTATTTGAGATACTATGCGCTCGACCACCTCTGATAAGAACTGCAGAGAAGAATCAAGTGTCACTTGTTGATTGGGGAAGGTGTTGTTATAAAAATGGGACCCTCGAGAGTATCGTGGACCCTTCGATGAAGTTAAGTATAGCGCCTGAATGTTTGAGAAAATTTGGTGAGATTGCTGTTAGTTGTTTGTTGGATGATGCAACGATGAGGCCATCAATGAATGATGTTGTTTGGATGTTGGAGTTTGCGTTACAGTTACAAGAGNNNNNNNNNNANNNNNNNNNTCGTTGTTCAGCATTCTCTTGGTTATGA 342 0.383 KSDVYSFGVVLFEILCARPPLIRTAEKNQVSLVDWGRCCYKNGTLESIVDPSMKLSIAPECLRKFGEIAVSCLLDDATMRPSMNDVVWMLEFALQLQEXXXXXXXRCSAFSWL 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132584g00001 113 Pfam Protein tyrosine and serine/threonine kinase 1 88 IPR001245 GO:0004672|GO:0006468
Trme132584g00001 113 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme132584g00001 113 SUPERFAMILY Protein kinase-like (PK-like) 1 91 IPR011009 -
Trme132584g00001 113 PANTHER OS07G0166700 PROTEIN 1 97 IPR045272 GO:0004714|GO:0006468
Trme132584g00001 113 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132584g00001 Trme-Chr132584 99 440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132584g00001 1 98 Receptor kinase-like Gene Family AT3G51550 64.286 2.54e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trme132584g00001 PK_Tyr_Ser-Thr 6.7e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132584g00001 - - vvo:131630062 171.785