Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132560g00001 GGACAGTATAAAACGATAGGGGATGCGTTGAAGATGGTACCGAAGAAGAGTTTGAAGAGATTTGTGGTGTATGTGAAGAAAGGGGAATATGTAGAGAATATTGATTTGGATAAGAATACATGGAATGTGATGATTTACGGTGATGGTATGACGGAAACCGTCGTAAGTGGTAGCCGGAATTTCATGGACGGCACACCTACGTTTGAAACTGCAACTTTTGGCAATTTATAA 231 0.4026 GQYKTIGDALKMVPKKSLKRFVVYVKKGEYVENIDLDKNTWNVMIYGDGMTETVVSGSRNFMDGTPTFETATFGNL 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132560g00001 76 Pfam Pectinesterase 1 74 IPR000070 GO:0030599|GO:0042545
Trme132560g00001 76 SUPERFAMILY Pectin lyase-like 1 73 IPR011050 -
Trme132560g00001 76 Gene3D - 1 75 IPR012334 -
Trme132560g00001 76 PANTHER PECTINESTERASE 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132560g00001 Trme-Chr132560 2 333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132560g00001 1 74 Carbohydrate Esterase AT1G53840 63.514 9.13e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132560g00001 - - lja:Lj3g3v2575540.1 137.887