Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132395g00001 ATGAAGGAATCATTATCATTATCCTTCCTAAACAATGAGTCATTACAAGTCTCATCCAATACAACTATTACACAAGTGATCAATGAGACACAAACATCATCGCCGCCGCCACCACCACCGCAGACGATTAAAAAAAGTAAGAAAAGTCCTTTTAGAGGAGTAAGAACAAGGCCATGGGGGAAATTTGCGGCGGAGATAAGGGACTCAACAAGAAAAGGGGCTAGAGTATGGCTTGGAACATTCGACACAGCCGAAGCAGCTGCTTTAGCTTACGACCAAGCTGCTTTTTCAACAAGAG 298 0.4329 MKESLSLSFLNNESLQVSSNTTITQVINETQTSSPPPPPPQTIKKSKKSPFRGVRTRPWGKFAAEIRDSTRKGARVWLGTFDTAEAAALAYDQAAFSTR 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132395g00001 99 CDD AP2 51 85 IPR001471 GO:0003700|GO:0006355
Trme132395g00001 99 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Trme132395g00001 99 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Trme132395g00001 99 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Trme132395g00001 99 PANTHER DNA-BINDING DOMAIN 33 99 IPR044808 GO:0003700|GO:0009873
Trme132395g00001 99 SMART rav1_2 50 99 IPR001471 GO:0003700|GO:0006355
Trme132395g00001 99 SUPERFAMILY DNA-binding domain 49 97 IPR016177 GO:0003677
Trme132395g00001 99 ProSiteProfiles AP2/ERF domain profile. 50 99 IPR001471 GO:0003700|GO:0006355
Trme132395g00001 99 MobiDBLite consensus disorder prediction 21 54 - -
Trme132395g00001 99 Gene3D AP2/ERF domain 50 99 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132395g00001 Trme-Chr132395 15 312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132395g00001 7 99 AP2-EREBP Transcription Factor Family AT3G23240 55.789 1.47e-27 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme132395g00001 AP2 9.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132395g00001 K14516 - gmx:100780775 98.2117