Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132341g00001 ATGATTAATCACTTGTCAGTTCCAATTCTGCAGACTTATGGTCGTAGCATGCTTCCTACAATCGACGCAACACCAACCATCTTTCTTACTGAAAGGATCTCAACTCGATTTGGTAAAGTTGCTCACGGAGATATTGTAGTTTTACGCTTACCTCACAACCCTAGACAGACTGTCGCAAAACGCTTGATTGGATTAGAGGGTGATAGGATTACATATGTTTCTAGTCCYGAAAACAGTGATAAGCATGAGACAGTTGTGGTTCCAAAGGGCCACGTTTGGGTAGAGGGTGATAACAAATATAATAGCAACGATTCTAGAAGTTTCGGTCCAGTT 333 0.4144 MINHLSVPILQTYGRSMLPTIDATPTIFLTERISTRFGKVAHGDIVVLRLPHNPRQTVAKRLIGLEGDRITYVSSPENSDKHETVVVPKGHVWVEGDNKYNSNDSRSFGPV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132341g00001 111 ProSitePatterns Signal peptidases I signature 3. 92 105 IPR019758 GO:0004252|GO:0016020
Trme132341g00001 111 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 4 111 - -
Trme132341g00001 111 PRINTS Bacterial leader peptidase 1 (S26A) family signature 87 106 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trme132341g00001 111 PRINTS Bacterial leader peptidase 1 (S26A) family signature 5 21 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trme132341g00001 111 PRINTS Bacterial leader peptidase 1 (S26A) family signature 58 70 IPR000223 GO:0006508|GO:0008236|GO:0016020
Trme132341g00001 111 CDD S26_SPase_I 8 111 IPR019533 GO:0004252|GO:0006465
Trme132341g00001 111 Gene3D Umud Fragment, subunit A 2 111 - -
Trme132341g00001 111 SUPERFAMILY LexA/Signal peptidase 10 111 IPR036286 -
Trme132341g00001 111 Pfam Signal peptidase, peptidase S26 83 111 IPR019533 GO:0004252|GO:0006465
Trme132341g00001 111 Pfam Signal peptidase, peptidase S26 11 72 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme132341g00001 Trme-Chr132341 1 469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132341g00001 17 111 MADS-box Gene Family AT1G29960 52.632 3.80e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132341g00001 K09647 - cave:132170793 146.747