Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme132004g00001 ATGGAGCTGCCTGAATGGACTGATATTGTGAAAACTGCAAAATTCAAAGAATTGGCTCCCTATGATCCCGATTGGTATTACATTAGAGCTGCTTCCATGGCTAGGAAGATCTACATAAGAGGGGGTCTTGGTGTTGGTGCATTTCAGAGGATTTATGGTGGGAGCCAGAGGAATGGAAGTCGTCCTCCCCATTTTTGCAAGAGTAGTGGCGCTATTGCTCGTCACATTCTTCAACAGTTGCAGAACCTGAACCTCATCGAGATGGACACCAAGGGGTACAGCTCTTTTTTCCTTACTTGA 300 0.4567 MELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYIRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGAIARHILQQLQNLNLIEMDTKGYSSFFLT 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme132004g00001 99 ProSitePatterns Ribosomal protein S19e signature. 62 81 IPR018277 GO:0003735|GO:0005840|GO:0006412
Trme132004g00001 99 Gene3D - 1 96 IPR036388 -
Trme132004g00001 99 PANTHER 40S RIBOSOMAL PROTEIN S19 2 92 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trme132004g00001 99 SUPERFAMILY "Winged helix" DNA-binding domain 1 92 IPR036390 -
Trme132004g00001 99 SMART Ribosomal_S19e_2 1 95 IPR001266 GO:0003735|GO:0005840|GO:0006412
Trme132004g00001 99 FunFam 40S ribosomal protein S19 1 96 - -
Trme132004g00001 99 Pfam Ribosomal protein S19e 1 91 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme132004g00001 1 92 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.696 2.25e-59 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme132004g00001 K02966 - gmx:100499800 177.563