Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1319261g00001 ATGCTATTGAGGGAGAATTTTAGAGTGAGGACTCCTGATGCTATTGTGGCGACTGATGGAAGTGGACATTACCGTAAAGTGACGGACGCGATACGGGCGGCACCTGATTATAGCATGAAAATATATGTTATATATGTGAAGAGAG 145 0.4345 MLLRENFRVRTPDAIVATDGSGHYRKVTDAIRAAPDYSMKIYVIYVKR 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1319261g00001 48 Gene3D - 8 48 IPR012334 -
Trme1319261g00001 48 Pfam Pectinesterase 13 48 IPR000070 GO:0030599|GO:0042545
Trme1319261g00001 48 SUPERFAMILY Pectin lyase-like 11 47 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1319261g00001 Trme-Chr1319261 41 185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1319261g00001 9 48 Carbohydrate Esterase AT3G43270 55.000 4.92e-11 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1319261g00001 K01051 - gmx:100810565 58.9214