Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1319025g00001 ATGTCTCTTTCTCATTCAGAACAAGTTAAGTTATTGTTGAGAGAAGGAGGGAAGGTTTTCTCTCGAGCCGAGCCAAGACACAAGCAAGAAATTGTGAGACTATTAAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAG 168 0.4167 MSLSHSEQVKLLLREGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALK 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1319025g00001 56 SUPERFAMILY HAD-like 13 56 IPR036412 -
Trme1319025g00001 56 Pfam haloacid dehalogenase-like hydrolase 18 56 - -
Trme1319025g00001 56 PRINTS H+-transporting ATPase (proton pump) signature 17 33 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme1319025g00001 56 PRINTS H+-transporting ATPase (proton pump) signature 45 56 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme1319025g00001 56 PANTHER CALCIUM-TRANSPORTING ATPASE 7 56 - -
Trme1319025g00001 56 Gene3D - 3 56 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1319025g00001 Trme-Chr1319025 1 168 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1319025g00001 1 56 Primary Pumps ATPases(2) AT4G00900 80.357 7.28e-26 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1319025g00001 K01537 - gmx:100800498 106.686