Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131842g00001 ATGCAATCTGAAATGGTTGGTGACAAAGGGCTGAATGAGTTCAAATCTGAAATTGCGGTTCTTACTAAAGTTCGACACAGGCATTTGGTTGCACTCCACGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGGACTCTTAGTCAACATCTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGACTGGAAGACCAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATACCTTCATGGTTTGGCTCAGCATATTTTTATCCACAGGGATCTGAAACCGTCAAACATCTTGCTTGGCGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCTGAAGGACAAGCCTCATTCGAGACTAGACTGGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAG 445 0.4562 MQSEMVGDKGLNEFKSEIAVLTKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLDWKTRLSIALDVARGVEYLHGLAQHIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131842g00001 148 Gene3D Phosphorylase Kinase; domain 1 2 49 - -
Trme131842g00001 148 ProSiteProfiles Protein kinase domain profile. 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme131842g00001 148 Gene3D Transferase(Phosphotransferase) domain 1 50 148 - -
Trme131842g00001 148 SUPERFAMILY Protein kinase-like (PK-like) 9 147 IPR011009 -
Trme131842g00001 148 ProSitePatterns Serine/Threonine protein kinases active-site signature. 96 108 IPR008271 GO:0004672|GO:0006468
Trme131842g00001 148 Pfam Protein tyrosine and serine/threonine kinase 8 146 IPR001245 GO:0004672|GO:0006468
Trme131842g00001 148 FunFam Os07g0541700 protein 49 139 - -
Trme131842g00001 148 PANTHER OSJNBA0070M12.3 PROTEIN 1 148 - -
Trme131842g00001 148 SMART serkin_6 1 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131842g00001 Trme-Chr131842 30 474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131842g00001 4 147 Receptor kinase-like Gene Family AT5G39000 52.055 1.82e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trme131842g00001 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131842g00001 K00924 - gmx:100776064 259.61