Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131763g00001 ATGGGAATTCAAGAAAAAGACCCACTTTCACAATTGAGTTTACCACCTGGTTTTAGATTTTACCCAACCGATGAAGAGCTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGGTCATCATTTTTCTCTTCAAATTATTGCTGAAATTGATCTCTACAAATTTGATCCATGGGTTCTACCAAGTAAGGCGATTTTTGGTGAGAAAGAATGGTATTTTTTTAGTCCAAGAGATAGGAAATATCCTAATGGGACTAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCTACTGGAACTGATAAGA 307 0.3681 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDK 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131763g00001 102 SUPERFAMILY NAC domain 10 102 IPR036093 GO:0003677|GO:0006355
Trme131763g00001 102 Gene3D NAC domain 23 102 IPR036093 GO:0003677|GO:0006355
Trme131763g00001 102 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 102 - -
Trme131763g00001 102 Pfam No apical meristem (NAM) protein 15 102 IPR003441 GO:0003677|GO:0006355
Trme131763g00001 102 ProSiteProfiles NAC domain profile. 14 102 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131763g00001 Trme-Chr131763 1 552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131763g00001 1 102 NAC Transcription Factor Family AT3G15500 90.196 1.73e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme131763g00001 NAM 3.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131763g00001 - - tpra:123895211 218.779