Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131716g00001 GAAGTAGAAGAAGAATTTGTCAAGGGTGAAGAAGGGTTTGATGGAGGTAGCAAGGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAAAGCTTGGTGGTGGTAGAGATGCTGATGGTTATGGTTATGGTGGTGGCTATGGTGATGGTTATGGCTATGGCGATGGTTATGGTTATGGTGATGCTGATGGAGTTGAAGACAAGGAAGAGAAAAGTGGTGATGGGACCCACCAGTTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGAGTTGCAAGTTTGGATTTAACTGCAGATTTAATCACCCTATTAGGAGAAAAAACCAGGTTAGTTCTCTTCTATTCATTTTTTGA 372 0.414 EVEEEFVKGEEGFDGGSKGWDTNSWNENVNEKLGGGRDADGYGYGGGYGDGYGYGDGYGYGDADGVEDKEEKSGDGTHQFPLRPEAEDCSFYMKTGSCKFGFNCRFNHPIRRKNQVSSLLFIF 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131716g00001 123 MobiDBLite consensus disorder prediction 1 32 - -
Trme131716g00001 123 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Trme131716g00001 123 PANTHER PROTEIN PHOSPHATASE RELATED 65 114 - -
Trme131716g00001 123 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Trme131716g00001 123 SUPERFAMILY CCCH zinc finger 83 111 IPR036855 GO:0046872
Trme131716g00001 123 Gene3D - 60 119 - -
Trme131716g00001 123 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 109 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131716g00001 Trme-Chr131716 3 374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131716g00001 63 120 C2H2 Transcription Factor Family AT5G18550 41.379 4.56e-10 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme131716g00001 zf-CCCH 4.3e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131716g00001 - - tpra:123882932 171.014