Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13165g00001 ATGATTACATCGACAACACTTAACTTTCTTAATCTCTCGTCGAATGGTTTCACCGGTGATCTACCACTGCTTACCGGAAGTTGCGCTGTACTTGATCTGTCAAATAACAAATTTGAAGGAAATTTAACAAGGATGTTGAAATGGGGGAACATAGAACAACTTGATCTCAGTGGGAATCGTTTGGCAGGGAACATCCCTGAGGTAACTCCTCAGTTTTTGCGATTGAATTATTTGAATCTATCCAATAATCATCTCAGTGACGACCTTCCGAAAGTGTTAACACAGTATCCAAAGCTTAGAGTGCTTGATATCAGTTCCAACCAATTAAAAGGCTTTCTTCCAGCCGATTTTTTCACAATGCCGACATTACAAGAGCTCCATCTTGGAAATAATTTGATCAATGGTGGCATCAATTTATCGTCTTCTCTTGACCAATCTCATCTTCAAGTTCTTGATCTTTCTCACAACCAACTTAGYAGCTTTTTTCCTGAYGAGTTTGGATCATTAACTAGCCTGAKAGTGCTCAACATTGCTGGAAATAACTTTGTTGGTTCTCTTCCAACCACTATTGCTGACATGAGTTCTCTAGACTCGTTAGATATATCGGATAATCGTTTCACTGGTCCACTTCCAAATAACATGCCAAAGGGACTCAAAGATTTCAATGCTTCAGAAAATGATCTATCTGGAGTTGTCCCTGAAATTCTTAGGAAGTTCCCTAGTTCTTCTTTCTTTCCTGGGAATGCTAAGTTGCATTTTCCAAATAGTCCTCCTGGATCAACCGTTTCAGCGACCRATAGTTCCAAGGAGAAGAAGTCTATGAGCACAGTCGTTAAAGTAATAATTATAGTGTCATGTGTGGTTGCCCTCTTCATATTAATCTTACTTGCTGTCTTTATACATTACATACGTATGTCAAGATCTTCAACACAAGAGTATGATACGAATAAGGATATCCGCAGCCGCCCCCAACCAGTTATCTCTGGACCTATTCGTCCGACAGAGAGAGGCGGTGCTTTGGTTGTATCAGCAGAGGACCTTGTGGCTTCACGTAAAGGATCACCTTCAGAAATAATTAGCCCTGATGAAAAAACTGCAGCTGTAGCTGGATTCTCCCCATCGAAACACAGCCACTTTTCATGGTCACCTGAGTCTGGTGATTCATTGACCGCTGAAAATCTTTCAAGACTAGATACGAGGTCGCCGGATAGGTTAATTGGAGAGCTGCATTTTCTTGATGATACAATATCGTTGACGCCTGAGGAGCTATCGAGGGCACCGGCTGAAGTTTTGGGAAGAAGTAGTCATGGTACTTCTTACAAGGCAACTATGGATAATGGTTTGTTGTTGAGAGTGAAGTGGTTGAGAGAAGGAGTGGCGAAACAAAGGAAAGAGTTTGTTAAAGAGATAAGAAAGTTCGCAAACATCAGGCATCCAAATGTTGTCGGTTTGAAAGGTTATTATTGGGGTCCTACGCAGCACGAGAAGCTTATTCTTTCTGATTACATTTCACCAGGAAGTCTTGCAAGTTTTCTTTATG 1540 0.4097 MITSTTLNFLNLSSNGFTGDLPLLTGSCAVLDLSNNKFEGNLTRMLKWGNIEQLDLSGNRLAGNIPEVTPQFLRLNYLNLSNNHLSDDLPKVLTQYPKLRVLDISSNQLKGFLPADFFTMPTLQELHLGNNLINGGINLSSSLDQSHLQVLDLSHNQLSSFFPDEFGSLTSLXVLNIAGNNFVGSLPTTIADMSSLDSLDISDNRFTGPLPNNMPKGLKDFNASENDLSGVVPEILRKFPSSSFFPGNAKLHFPNSPPGSTVSATBSSKEKKSMSTVVKVIIIVSCVVALFILILLAVFIHYIRMSRSSTQEYDTNKDIRSRPQPVISGPIRPTERGGALVVSAEDLVASRKGSPSEIISPDEKTAAVAGFSPSKHSHFSWSPESGDSLTAENLSRLDTRSPDRLIGELHFLDDTISLTPEELSRAPAEVLGRSSHGTSYKATMDNGLLLRVKWLREGVAKQRKEFVKEIRKFANIRHPNVVGLKGYYWGPTQHEKLILSDYISPGSLASFLY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13165g00001 513 SUPERFAMILY L domain-like 6 241 - -
Trme13165g00001 513 FunFam Leucine-rich repeat receptor protein kinase EMS1 43 140 - -
Trme13165g00001 513 PANTHER OS07G0626500 PROTEIN 1 513 - -
Trme13165g00001 513 FunFam Leucine-rich repeat receptor-like protein kinase 410 502 - -
Trme13165g00001 513 Pfam Protein tyrosine and serine/threonine kinase 429 512 IPR001245 GO:0004672|GO:0006468
Trme13165g00001 513 ProSiteProfiles Leucine-rich repeat profile. 147 168 IPR001611 GO:0005515
Trme13165g00001 513 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 141 232 - -
Trme13165g00001 513 ProSiteProfiles Protein kinase domain profile. 425 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13165g00001 513 Gene3D Phosphorylase Kinase; domain 1 416 502 - -
Trme13165g00001 513 SUPERFAMILY Protein kinase-like (PK-like) 428 512 IPR011009 -
Trme13165g00001 513 Pfam Leucine rich repeat 146 206 IPR001611 GO:0005515
Trme13165g00001 513 Pfam Leucine rich repeat 74 133 IPR001611 GO:0005515
Trme13165g00001 513 Gene3D Ribonuclease Inhibitor 2 261 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13165g00001 Trme-Chr13165 12 1551 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13165g00001 54 512 Receptor kinase-like Gene Family AT1G67510 29.876 5.30e-44 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trme13165g00001 PK_Tyr_Ser-Thr 1.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13165g00001 - - lja:Lj0g3v0361919.1 787.334