Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131546g00001 ATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAAGGATAAGAAGACTGGAGAAATTGTAGCACTTAAGAAGGTGAAGATGGAAATGGAGAGGGATGGCTTTCCAATGACAGCCCTGAGAGAAATGAATATTCTCTTGTCTTTAGACCATCCCTCTATTGTGGATGTTAAAGAAGTAGTCGTGGATGATAATGATTGCGATGATGGTACTTATATGGTAATGGAACATATGCAATACGATCTCAAACAATTGATGGAGGCAAAGACACAACCTTTTAGTATGGGGGAAATTAAATCCTTCATGAAGCAACTTCTTGAAGGAGTCAAGTATCTCCACGATAACTGGATTCTTCATAGGGATTTGAAGTCATCTAACATTCTGCTGAATAAAGATGGACATCTGAAAATATGCGACTTCGGAATGTCAAGGCAGTATGGAAGCCCTCTGAAGCAATATACTTCTCTTGTGGTTACACTATGGTACAGGTGA 504 0.381 MIKKINEGTYGVVYKAKDKKTGEIVALKKVKMEMERDGFPMTALREMNILLSLDHPSIVDVKEVVVDDNDCDDGTYMVMEHMQYDLKQLMEAKTQPFSMGEIKSFMKQLLEGVKYLHDNWILHRDLKSSNILLNKDGHLKICDFGMSRQYGSPLKQYTSLVVTLWYR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131546g00001 167 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Trme131546g00001 167 ProSiteProfiles Protein kinase domain profile. 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme131546g00001 167 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trme131546g00001 167 SUPERFAMILY Protein kinase-like (PK-like) 2 167 IPR011009 -
Trme131546g00001 167 Pfam Protein kinase domain 3 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme131546g00001 167 PANTHER CELL DIVISION PROTEIN KINASE 2 167 - -
Trme131546g00001 167 FunFam cyclin-dependent kinase G-2 isoform X1 1 83 - -
Trme131546g00001 167 SMART serkin_6 1 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme131546g00001 167 Gene3D Transferase(Phosphotransferase) domain 1 84 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131546g00001 Trme-Chr131546 75 578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131546g00001 2 167 Core Cell Cycle Gene Families AT5G10270 46.369 9.39e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trme131546g00001 Pkinase 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131546g00001 K08818 - gmx:100814438 266.159