Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131523g00001 ATGAATATGAATTTTGAAGCAATGAATAGAAGCTCTTCAACAACAACATCTTCATCAGACTCATGTTCATCAGAATCAAATCCAACGAACCAAAACAAACTAGACAGAATCAAAGGTCCATGGAGTGCTGAAGAAGATAGAATCCTAACNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATCAGCCGTTACATAAAAGGAAGGTCCGGCAAATCCTGCAGACTCCGGTGGTGTAATCAGCTCAGTCCAACGGTGGAGCACCGTCCATTCTCGCCGCAAGAAGATGAAACAATCATAGCGGCGCATACTCAATACGGTAACCGTTGGGCTACCATTGCACGTCTTTTACCAGGAAGAACTGATAATGCTGTGAAGAATCATTGGAATTCGACGCTTAAGCGAAGAGCAGGTTGTGGCGGTGGTCGCGGTGTCGGCGGTGATTCTGTTACGGTTGCTGGAACTGTTAGCGGTGGAAATGAAAGGGGAAGTTGTTCTGCTTTGGCGTTTGAAGATGATCCGTTGACCGCGTTGACTCTTGCTCCTCCGGGGAATGTTAATGGTT 571 0.4308 MNMNFEAMNRSSSTTTSSSDSCSSESNPTNQNKLDRIKGPWSAEEDRILTXXXXXXXXXXXXXISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSPQEDETIIAAHTQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAGCGGGRGVGGDSVTVAGTVSGGNERGSCSALAFEDDPLTALTLAPPGNVNG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131523g00001 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Trme131523g00001 190 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Trme131523g00001 190 SUPERFAMILY Homeodomain-like 30 81 IPR009057 -
Trme131523g00001 190 PANTHER MYB PROTEIN-RELATED 38 154 - -
Trme131523g00001 190 SMART sant 37 86 IPR001005 -
Trme131523g00001 190 SMART sant 89 137 IPR001005 -
Trme131523g00001 190 SUPERFAMILY Homeodomain-like 64 138 IPR009057 -
Trme131523g00001 190 ProSiteProfiles Myb-like domain profile. 33 84 IPR001005 -
Trme131523g00001 190 MobiDBLite consensus disorder prediction 1 41 - -
Trme131523g00001 190 MobiDBLite consensus disorder prediction 1 36 - -
Trme131523g00001 190 Pfam Myb-like DNA-binding domain 92 134 IPR001005 -
Trme131523g00001 190 CDD SANT 92 135 IPR001005 -
Trme131523g00001 190 CDD SANT 40 82 IPR001005 -
Trme131523g00001 190 Gene3D - 37 89 - -
Trme131523g00001 190 Gene3D - 92 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131523g00001 Trme-Chr131523 1 571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131523g00001 35 147 MYB Transcription Factor Family AT3G50060 68.142 3.27e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme131523g00001 Myb_DNA-binding 9.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131523g00001 - - gmx:778051 228.794