Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131395g00001 ATGGAACCAGCTCCACCCTCATTGGAGCTAGACCTTGACAACCTTAAAGCACTCAAAATCCTAGGCAAAGGTGCCATGGGCACTGTCTTCCTCATCCACAACTCCACCGCCNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNAAAACCTCCGTCCACGCCAAACTCGACGCCGAACGCCGCGCCCGTTGGGAAATTCAAGTTCTCTCAAGCCTCTCCCATCCTTTCCTCCCTTCCATTCTTGGAACATATGAGTCCCCACAATTCTTAGCGTGGGCCCTACCTTATTGTCCTGGTGGTGACCTTAATGTCCTTCGTTACCACCAAAACGACCGCGTTTTCTCTCCATGTGTTATTCGTTTCTATATAGCTGAAATCCTCTGCGCTCTCGACCACCTTCATTCCATGGGCATCGCTTACCGTGACTTAAAACCCGAAAATGTCCTCATTCAACATTCCGGCCACGTCACGTTAACCGATTTTGATCTCTCTCGAAAACTCAA 518 0.4517 MEPAPPSLELDLDNLKALKILGKGAMGTVFLIHNSTAXXXXXXXXXXXXXXXXKTSVHAKLDAERRARWEIQVLSSLSHPFLPSILGTYESPQFLAWALPYCPGGDLNVLRYHQNDRVFSPCVIRFYIAEILCALDHLHSMGIAYRDLKPENVLIQHSGHVTLTDFDLSRKL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131395g00001 172 PANTHER FLIPPASE KINASE 1-RELATED 10 171 - -
Trme131395g00001 172 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Trme131395g00001 172 Pfam Protein kinase domain 17 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme131395g00001 172 SMART serkin_6 15 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme131395g00001 172 Gene3D Transferase(Phosphotransferase) domain 1 106 171 - -
Trme131395g00001 172 SUPERFAMILY Protein kinase-like (PK-like) 7 171 IPR011009 -
Trme131395g00001 172 Gene3D Phosphorylase Kinase; domain 1 15 105 - -
Trme131395g00001 172 FunFam Serine/threonine-protein kinase OXI1 106 172 - -
Trme131395g00001 172 ProSiteProfiles Protein kinase domain profile. 15 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131395g00001 Trme-Chr131395 1 518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131395g00001 10 172 AGC Kinase Gene Family AT3G20830 60.714 9.59e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme131395g00001 Pkinase 1.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131395g00001 - K08286 gmx:100782070 264.233