Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13131g00001 ATGGTAGAAAATAGAAATCCAAGTGTAAGTAAAGTATATAAAGAGCTTGTTGGAAGTGCATACTATGTGGCTCCAGAGGTGTTAAAACGGAATTATGGAAAGGAGATTGATGTCTGGAGCGCAGGAGTTATTTTATATATCCTCTTATGTGGGGTGCCTCCATTTTGGGCTGGTAACTACAATGTTATAATTCTGTTTCAGTTTACACAGTTAGGTAAGCTCGATCTGGAGAGTGCGCCATGGCCTTCTATTTCAGCTGCTGCAAAAGATTTGATCAGGAAAATGCTGAGTTATGACCCTAAGAAACGCATTACAGCTTCTGATGCGCTCGAACACCCATGGATGAAGGAAGGTGGTGAGGCATCAGACAAGCCTTTAGACAATGCTGTTTTAATTAGGATGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGATGAGGAAATCAAGGGATTGAAACAAATGTTCAACAATATTGATACCGATCGAAGTGGCACAATCACATATGAAGAACTCAAATCTGGACTGTCCAAATTGGGATCCAAGCTTAATGAATCTGAAATAAAGCAGCTAATGGATGCTGCTGACGTTGACAAGAATGGGACTATTGACTATC 649 0.3975 MVENRNPSVSKVYKELVGSAYYVAPEVLKRNYGKEIDVWSAGVILYILLCGVPPFWAGNYNVIILFQFTQLGKLDLESAPWPSISAAAKDLIRKMLSYDPKKRITASDALEHPWMKEGGEASDKPLDNAVLIRMKQFRAMNKMKKLALKVIAENLSDEEIKGLKQMFNNIDTDRSGTITYEELKSGLSKLGSKLNESEIKQLMDAADVDKNGTIDY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13131g00001 216 Gene3D Transferase(Phosphotransferase) domain 1 1 119 - -
Trme13131g00001 216 SMART efh_1 162 190 IPR002048 GO:0005509
Trme13131g00001 216 Pfam EF-hand domain pair 163 216 IPR002048 GO:0005509
Trme13131g00001 216 CDD EFh 163 216 IPR002048 GO:0005509
Trme13131g00001 216 ProSitePatterns EF-hand calcium-binding domain. 171 183 IPR018247 -
Trme13131g00001 216 ProSiteProfiles EF-hand calcium-binding domain profile. 194 216 IPR002048 GO:0005509
Trme13131g00001 216 Pfam Protein kinase domain 10 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13131g00001 216 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Trme13131g00001 216 SUPERFAMILY EF-hand 141 216 IPR011992 -
Trme13131g00001 216 Gene3D - 122 216 - -
Trme13131g00001 216 SMART serkin_6 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13131g00001 216 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 210 - -
Trme13131g00001 216 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13131g00001 216 SUPERFAMILY Protein kinase-like (PK-like) 13 135 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13131g00001 Trme-Chr13131 1 1266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13131g00001 9 216 EF-hand Containing Proteins AT1G76040 74.038 3.49e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme13131g00001 Pkinase 4.7e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13131g00001 K13412 - gmx:100816157 337.035