Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13127g00001 ATGAACATGATAAACACGATGAACACTCAACCACCACCGCCTCCGCCACCACCACCTTCTAGGAAGCATTGGGAGATTCCTGACCTTTTAACACCAATTGTTGAATCACCAACTGTTTTGATTCAACAAAGTGTTGTTTCTCAAAGAAAACAATGGGAAATTCCTGTTCTTACAACACCAATTGCACCTTCTATTAGTGTTTCAGCAGCTCCTCCACCGCCNNNNCCACCACCACCGGCAATGCCGATGCGGCAAAGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTTGGTCAACCAGTGGTTTGTAGGCCGCCGGAATTGAAACCTCCTTCAAGGCCTTTTGTGTTGCAAACCCCTCCAAATACATTGGTTTCTCCAGTTGAATTGCCACCTAGTTTCGAGGAGAATTCTGAAGAGGTTTCTAAACCAAAGTTGAAACCTTTGCATTGGGATAAAGTGAGGGCTAGTTCCGATCGTGAAATGGTTTGGGATCATTTGAGATCAAGCTCTTTTAAGTTGAATGAGGAAATGATAGAAACATTGTTTGTGGTGAACACACCGAATTCAAAACCAAAAGATGCTACACCACGTTCGGTTCTTGCACCTCAACATAATGAGGATAGGGTATTGGATCCTAAAAAGTCGCAAAATATTGCTATCTTGCTTCGAGCGGTTAACGTTACGATAGAGGAAGTGTGTGAAGCACTGTTAGAAGGTATGTAA 729 0.4335 MNMINTMNTQPPPPPPPPPSRKHWEIPDLLTPIVESPTVLIQQSVVSQRKQWEIPVLTTPIAPSISVSAAPPPPXPPPPAMPMRQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVLQTPPNTLVSPVELPPSFEENSEEVSKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNSKPKDATPRSVLAPQHNEDRVLDPKKSQNIAILLRAVNVTIEEVCEALLEGM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13127g00001 242 ProSiteProfiles Formin homology-2 (FH2) domain profile. 137 242 IPR015425 -
Trme13127g00001 242 PANTHER FORMIN-RELATED 10 241 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trme13127g00001 242 SUPERFAMILY Formin homology 2 domain (FH2 domain) 71 240 - -
Trme13127g00001 242 MobiDBLite consensus disorder prediction 99 118 - -
Trme13127g00001 242 MobiDBLite consensus disorder prediction 66 83 - -
Trme13127g00001 242 Gene3D Formin, FH2 domain 134 242 IPR042201 -
Trme13127g00001 242 MobiDBLite consensus disorder prediction 1 25 - -
Trme13127g00001 242 MobiDBLite consensus disorder prediction 64 132 - -
Trme13127g00001 242 MobiDBLite consensus disorder prediction 8 23 - -
Trme13127g00001 242 Pfam Formin Homology 2 Domain 140 241 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13127g00001 Trme-Chr13127 546 1503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13127g00001 103 241 FH2 protein (formin) Gene Family AT3G25500 67.123 1.22e-51 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13127g00001 - - cam:101490813 375.555