Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131268g00001 ATGCTTGGAGAGGCTTTGTATCCACTAGTAGATCAGCTGGAACATGATTCTGCAGCTAAGGTTACTGGTATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTTATTGAGTCACCCGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGACGTGCTGCGAAATGTTGCTCAACAGCAAGGCAACAGCCCGGCAGATCAACTAGCTTCACTTTCTCTCAACGATAATCTATAA 237 0.4599 MLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQGNSPADQLASLSLNDNL 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131268g00001 78 Pfam Poly-adenylate binding protein, unique domain 1 54 IPR002004 GO:0003723
Trme131268g00001 78 Gene3D - 1 61 - -
Trme131268g00001 78 MobiDBLite consensus disorder prediction 59 78 - -
Trme131268g00001 78 SUPERFAMILY PABC (PABP) domain 1 73 IPR036053 GO:0003723
Trme131268g00001 78 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 59 IPR002004 GO:0003723
Trme131268g00001 78 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UBR5 2 67 - -
Trme131268g00001 78 SMART poly_2 1 57 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131268g00001 Trme-Chr131268 8 244 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131268g00001 1 78 Eukaryotic Initiation Factors Gene Family AT1G49760 80.769 3.33e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131268g00001 K13126 - zju:107419988 143.28