Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme131116g00001 GGTCGATTTGAGATTTTATCTTTGTCTGGATCATACACGGTCTCAGACAATAGTGGCATGAAAACTCGAGAGGGTGGATTGAGTGTCTCACTTGCTGGTCCTGATGGTCGAGTGATCGGAGGCGCTGTTGCTGGTCTTCTTACAGCTGCTGGCCCCATCCAAGTATGA 168 0.494 GRFEILSLSGSYTVSDNSGMKTREGGLSVSLAGPDGRVIGGAVAGLLTAAGPIQV 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme131116g00001 55 CDD DUF296 1 55 IPR005175 -
Trme131116g00001 55 ProSiteProfiles PPC domain profile profile. 1 55 IPR005175 -
Trme131116g00001 55 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 55 IPR039605 GO:0003680
Trme131116g00001 55 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 55 IPR005175 -
Trme131116g00001 55 Gene3D - 1 55 - -
Trme131116g00001 55 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme131116g00001 Trme-Chr131116 314 481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme131116g00001 1 55 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 67.273 1.04e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme131116g00001 - - gmx:100779227 94.7449