Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13093g00001 ATGATTACTGGTTTAGTTTGCATTACCCCTGCTGCAGGAGTTGTACAAGGATGGGCATCCCTTATAATGGGAGTATTCTCCGGCTCAATTCCATGGTTCACTATGATGGTAATCCACAAGAGATCAAAGTTACTTCAAAAGGTAGATGATACAATGGCAGTGTTACACACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTCTTTGCTGAGCCAAAATTGAATGCATTATTCTATGAAGCTTATGCAATTTGGGGTCAAGGTGATAAACTTGAAAATTCAAGTTCAAAATATGGAAGTTCTTTGTATGAAGATGTTGAAGTTGCCGCGACGAAGAAGAACAAGCGCGGTAGCCAGATTGAGATGAT 377 0.4058 MITGLVCITPAAGVVQGWASLIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNALFYEAYAIWGQGDKLENSSSKYGSSLYEDVEVAATKKNKRGSQIEM 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13093g00001 125 Pfam Ammonium Transporter Family 1 86 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trme13093g00001 125 Gene3D Ammonium transporter AmtB like domains 1 106 IPR029020 -
Trme13093g00001 125 SUPERFAMILY Ammonium transporter 1 83 - -
Trme13093g00001 125 PANTHER AMMONIUM TRANSPORTER MEP2 1 88 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13093g00001 Trme-Chr13093 69 1553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13093g00001 1 80 Inorganic Solute Cotransporters AT2G38290 63.750 9.59e-32 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13093g00001 K03320 - vvi:100249173 157.918