Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13089g00001 GCACATAATACTGAGAATCAACAACTAGTAGCTGGTTCTGGTAGTTCTGCAACTTTGACACCAGAAATCTCAAACTTGGAGGACTCAACTTTTAAAGTTGGAAAACTTTCTGTTGAACAAAGGAAAGAAAAGATTCACAGATATATGAAGAAAAGAAATGAAAGAAACTTCAGTAAGAAAATTAAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGACCTCGAGTTAGAGGAAGATTTGCAAAGAATGATGATTTTGGAGATGCACAAAGAACTGCTAGTGGCAATCATGAAGAAGAAGATGAAGAAGAGGTAGCTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATATTTGCTCATATAAGTGGAGTGAATTCCTTCAAATGCAACTATTCCATCCAATCATGGATTTGA 420 0.3643 AHNTENQQLVAGSGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEEVAVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13089g00001 139 MobiDBLite consensus disorder prediction 1 26 - -
Trme13089g00001 139 MobiDBLite consensus disorder prediction 75 98 - -
Trme13089g00001 139 ProSiteProfiles CCT domain profile. 41 83 IPR010402 GO:0005515
Trme13089g00001 139 Pfam CCT motif 41 83 IPR010402 GO:0005515
Trme13089g00001 139 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 113 IPR045281 GO:0009909
Trme13089g00001 139 MobiDBLite consensus disorder prediction 75 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13089g00001 Trme-Chr13089 339 1567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13089g00001 21 85 C2C2-CO-like Transcription Factor Family AT5G24930 41.538 1.54e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme13089g00001 CCT 9.2e-20 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13089g00001 - - aprc:113871720 239.195