LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme130891g00001	ATGGGCATCACAAGTGTCATTGTGACTGGTGATAACCATGCTACTGCAACTGCTATTGCAAATGAAGTTGGTATTGATCAGGTTTTTGCGGAGACAGATCCAGTAGGCAAAGCTGATAAGATGAAGGGAATGACTGTGGCAATGGTAGGTGATGGAATAAACGACTCTCCGGCTTTAGTTGCTGCGGATGTTGGTATGGCAATTGGTGCTGGAACTGATGTAGCTATAGAAGCTGCTGATATAGTTCTGATCAAAAGCAGCTTGGAAGATGTGATTACAGCCATAGATCTATCTAGAAAGACCATGTCTCGCATCAGACTGAACTACATTTGGGCTCTTGGTTACAACATTTTAGGCATGCCAATTGCTGCTGGT	375	0.4373	MGITSVIVTGDNHATATAIANEVGIDQVFAETDPVGKADKMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDVAIEAADIVLIKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAG	125

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme130891g00001	125	SUPERFAMILY	HAD-like	2	124	IPR036412	-
	Trme130891g00001	125	PRINTS	P-type cation-transporting ATPase superfamily signature	1	11	-	-
	Trme130891g00001	125	PRINTS	P-type cation-transporting ATPase superfamily signature	72	84	-	-
	Trme130891g00001	125	PRINTS	P-type cation-transporting ATPase superfamily signature	49	68	-	-
	Trme130891g00001	125	Pfam	haloacid dehalogenase-like hydrolase	1	63	-	-
	Trme130891g00001	125	NCBIfam	HAD-IC family P-type ATPase	1	123	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme130891g00001	125	PRINTS	H+-transporting ATPase (proton pump) signature	49	65	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme130891g00001	125	PRINTS	H+-transporting ATPase (proton pump) signature	80	105	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trme130891g00001	125	PANTHER	P-TYPE CATION-TRANSPORTING ATPASE	1	125	-	-
	Trme130891g00001	125	Gene3D	-	1	116	IPR023214	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme130891g00001	Trme-Chr130891	13	595	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme130891g00001	1	125	Primary Pumps ATPases	AT1G63440	75.385	1.89e-58	192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme130891g00001	K17686		-	gmx:100793894	224.942