Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme130875g00001 ATGCCGGAAGATTCTNNNNNTNNNNNNNNNNTNNNNNNNNNNTGTGCCTTGTCCAACAGAGGTGGTTTGATCCACCCTAATACTTCCAGAAAAGTCTTGGATGAACTTTCTGCAGCTCTTGAAGTTCCTTTGGAACCTGGGACCGTCAATCGGGGCAGCGTTTGTCTAAATCCCGGCATGACAGTAAATGATTGGACAGCCTTTTGTGGTTCAAGCACCACAAGAGCAGAGCTCCGTGTGATTGATAGAGTTTT 254 0.4213 MPEDSXXXXXXXXXCALSNRGGLIHPNTSRKVLDELSAALEVPLEPGTVNRGSVCLNPGMTVNDWTAFCGSSTTRAELRVIDRV 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme130875g00001 84 Pfam eIF-6 family 14 66 IPR002769 GO:0042256|GO:0043022
Trme130875g00001 84 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 14 84 IPR002769 GO:0042256|GO:0043022
Trme130875g00001 84 Gene3D - 7 84 - -
Trme130875g00001 84 SUPERFAMILY Pentein 14 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme130875g00001 Trme-Chr130875 1 343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme130875g00001 15 84 Eukaryotic Initiation Factors Gene Family AT3G55620 64.286 2.34e-27 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme130875g00001 K03264 - pda:103709397 100.908