Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme130818g00001 ATGGACCCGGCGTACATTTCGACAAGCAAATTAACAACCAAGAGTGACATATACAGTTTTGGTATCATACTTTTCGAGCTTATCACTGCCATCCATCCACATCAAAATTTGATGGAATATATTAACCTTGCTGCAATGGAACATGATGGTATAGATGAGATACTTGACAAGCAACTTGTTGGAAAATGCAATGTTGTAGAAGTGAGGCAACTTGCTAAAATTGCACACAAATGCTTACACAAATCACCTAAGAAAAGACCTTCTATAG 268 0.3731 MDPAYISTSKLTTKSDIYSFGIILFELITAIHPHQNLMEYINLAAMEHDGIDEILDKQLVGKCNVVEVRQLAKIAHKCLHKSPKKRPSI 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme130818g00001 89 Pfam Protein tyrosine and serine/threonine kinase 3 88 IPR001245 GO:0004672|GO:0006468
Trme130818g00001 89 Gene3D Transferase(Phosphotransferase) domain 1 1 89 - -
Trme130818g00001 89 ProSiteProfiles Protein kinase domain profile. 1 89 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme130818g00001 89 PANTHER OS01G0253100 PROTEIN 1 89 - -
Trme130818g00001 89 SUPERFAMILY Protein kinase-like (PK-like) 1 89 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme130818g00001 Trme-Chr130818 44 417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme130818g00001 1 89 Receptor kinase-like Gene Family AT1G16150 37.500 1.97e-18 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Trme130818g00001 PK_Tyr_Ser-Thr 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme130818g00001 - - gmx:100819995 172.17