Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme130646g00001 AGGGAAAGTGGTAGATCTAGAGGCTTTGGATTTGTGACTTACGGTAGTGCTGAAGAGGTCAATAGTGCTATTCGGTCCTTAGATGGTGTGGATTTGAATGGAAGAGCCATACGGGTCGCACCGGCTGATAGTAGACCAAAGCGTGAATTTTGA 153 0.4641 RESGRSRGFGFVTYGSAEEVNSAIRSLDGVDLNGRAIRVAPADSRPKREF 50
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme130646g00001 50 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 38 IPR000504 GO:0003723
Trme130646g00001 50 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 44 IPR000504 GO:0003723
Trme130646g00001 50 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 46 - -
Trme130646g00001 50 Gene3D - 1 49 IPR012677 -
Trme130646g00001 50 SUPERFAMILY RNA-binding domain, RBD 2 48 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme130646g00001 Trme-Chr130646 2 372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme130646g00001 3 49 Eukaryotic Initiation Factors Gene Family AT4G34110 40.426 6.62e-07 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme130646g00001 - - ming:122057240 86.6557