Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme130562g00001 GTGCAAGCTGTCACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCAGGGACTTGTCTGACTCAGGTTTCGGACTCTTCCGAAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACTGGCACTACGGATTCTCTTGTTAAGATCTGGGATGTAAAAAGTCAGGTAGACAATATATTTTGGATTTAA 240 0.4208 VQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDSSEGYTSAAFHPDGLILGTGTTDSLVKIWDVKSQVDNIFWI 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme130562g00001 79 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 72 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Trme130562g00001 79 SMART WD40_4 29 68 IPR001680 GO:0005515
Trme130562g00001 79 ProSitePatterns Trp-Asp (WD) repeats signature. 55 69 IPR019775 -
Trme130562g00001 79 SUPERFAMILY WD40 repeat-like 1 72 IPR036322 GO:0005515
Trme130562g00001 79 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 36 71 - -
Trme130562g00001 79 Gene3D - 1 76 IPR015943 GO:0005515
Trme130562g00001 79 ProSiteProfiles Trp-Asp (WD) repeats profile. 36 71 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme130562g00001 1 74 U-box Gene Family AT2G33340 76.316 8.27e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme130562g00001 K10599 - gmx:100527039 140.969