Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme130554g00001 ATGCAGGCAGGTGCTAAAGTAAATGTTATTGCTGGTGGAGCAACTCCTTTGCACATTGCAGCTGATAATGGGAGTCTAGAACTTCTAAATTCCTTATTGAAAGCTGGAGCTGATCCTAATGTCTCTGATGAGGATGGTGTTAAGCCAATACAGGTTGCAGCTGGAAGGGGTAATCGTGCAGCTGTTGAGATATTGTTCCCCGCAACTTCTAAAATTGATGGTATTCCTTCTTGGACTGTTGATGGGATACTTGAGTATATTCAATCAG 268 0.4254 MQAGAKVNVIAGGATPLHIAADNGSLELLNSLLKAGADPNVSDEDGVKPIQVAAGRGNRAAVEILFPATSKIDGIPSWTVDGILEYIQS 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme130554g00001 89 SUPERFAMILY Ankyrin repeat 2 69 IPR036770 -
Trme130554g00001 89 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 2 88 - -
Trme130554g00001 89 ProSiteProfiles Ankyrin repeat profile. 12 44 IPR002110 GO:0005515
Trme130554g00001 89 Gene3D - 1 75 IPR036770 -
Trme130554g00001 89 Pfam Ankyrin repeats (many copies) 12 53 IPR002110 GO:0005515
Trme130554g00001 89 SMART ANK_2a 45 74 IPR002110 GO:0005515
Trme130554g00001 89 SMART ANK_2a 12 41 IPR002110 GO:0005515
Trme130554g00001 89 ProSiteProfiles Ankyrin repeat region circular profile. 12 44 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme130554g00001 13 74 Ion Channels AT2G26650 41.935 6.37e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme130554g00001 - - gmx:100798118 150.984