Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme13047g00001 AAGGAAAGTGATCCATTGGATTGGAATTCCCGGATGAAGATTGCTCTTGGTGCAGCTCGAGGATTGGCTTATTTGCATGAAGATTCCAATCCATATGTCATACACCGGGACTTCAAGTCCAGTAACATCTTGTTGGAATATGATTTTACAGCGAAGGTTTCGGATTTTGGATTGGCTAGAACAGCACTGGAAGAGGGAAACAAACACATCTCCACACATGTCATGGGTACATTCGGCTACTTAGCTCCTGAATATGCAATGACTGGTCATCTTCTCGTCAAAAGTGATGTTTACAGTTACGGAGTTGTACTCCTTGAGCTTCTTACTGGTAGAAAGCCTGTGGATTTGTCACAACCGCCAGGTCAAGAAAATCTTGTCACATGGGTTCGTCCACTTCTCACGAGTAACGAAAGTTTGCAGACAATCATAGACCCAGTTGTAAAGCCAAGCATATCCATTGATACTGTGGTAAAAGTCGCAGCAATTGCATCCATGTGTGTGCAACCAGAAGTATCTCAACGACCTTTCATGGGAGAAGTTGTTCAGGCCTTGCAGCTTGTATGCAGTGAGTTTGAGGAAACAAACTATATAGAACCAAGTAACTTTCAAGAAGAGGGTCTTGTGACAAATGTGGAAGGCAAGTTTTTGGAGGTTTCATGTGAGAGAGAGGAGTTTTCGGAGTATCAGAAAACACTTTATGGCTATCAATCTGGCGAAGAAAAGGTAAGATTATCAGCTTCAGAACTACCAAGTACTTCAGGCCAAGAATTTGAGTCATTTAGGAGAAAATCTACTTCAGGGCCTATTCCCACTGAGAAGAAAAGACACTTNTGGCAAAATTTGAGAGGTTCGTCTAAAGGTAGCGCCAGTGAACATGGATTTTCAACTAAACTATGGCCTGGATCTCATTAA 912 0.4221 KESDPLDWNSRMKIALGAARGLAYLHEDSNPYVIHRDFKSSNILLEYDFTAKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPPGQENLVTWVRPLLTSNESLQTIIDPVVKPSISIDTVVKVAAIASMCVQPEVSQRPFMGEVVQALQLVCSEFEETNYIEPSNFQEEGLVTNVEGKFLEVSCEREEFSEYQKTLYGYQSGEEKVRLSASELPSTSGQEFESFRRKSTSGPIPTEKKRHXWQNLRGSSKGSASEHGFSTKLWPGSH 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme13047g00001 303 ProSiteProfiles Protein kinase domain profile. 1 187 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme13047g00001 303 Gene3D Transferase(Phosphotransferase) domain 1 1 206 - -
Trme13047g00001 303 PANTHER OS01G0750732 PROTEIN 1 200 - -
Trme13047g00001 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 33 45 IPR008271 GO:0004672|GO:0006468
Trme13047g00001 303 MobiDBLite consensus disorder prediction 281 297 - -
Trme13047g00001 303 FunFam Receptor-like serine/threonine-protein kinase ALE2 1 201 - -
Trme13047g00001 303 Pfam Protein tyrosine and serine/threonine kinase 3 184 IPR001245 GO:0004672|GO:0006468
Trme13047g00001 303 SUPERFAMILY Protein kinase-like (PK-like) 4 185 IPR011009 -
Trme13047g00001 303 MobiDBLite consensus disorder prediction 255 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme13047g00001 Trme-Chr13047 1 1453 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme13047g00001 1 298 Receptor kinase-like Gene Family AT5G56890 61.765 1.55e-113 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trme13047g00001 PK_Tyr_Ser-Thr 5.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme13047g00001 - - gmx:100814040 486.108