Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme129958g00001 ATGTCGGATGATGAAGACGAACAAATGCAGATGGATTATTGTTTAGATAATAATCAATCTGGTAGTGGTGGTGATCATGACATGATGGGTCTTGGTCCATTACTTCCTACTGAATCTGAAAGATCACTCATGGAACGAGTTCGTCAAGAACTCAAAATTGAGCTCAAACAGGGTTTTAAGTCTCGAATTGAAGATGTACGCGAAGAAATATTAAGGAAAAGAAGAGCAGGTAAATTGCCAGGCGACACAACTTCTGTCTTAAAGAATTGGTGGCAGCAGCATGCAAAGTGGCCTTATCCAACTGAAGATGACAAAGCAAAACTTGTGGAGGAGACGGGGCTGCAGCT 347 0.4179 MSDDEDEQMQMDYCLDNNQSGSGGDHDMMGLGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme129958g00001 116 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 25 115 - -
Trme129958g00001 116 Gene3D - 71 116 - -
Trme129958g00001 116 Pfam Homeobox KN domain 90 115 IPR008422 GO:0003677|GO:0006355
Trme129958g00001 116 CDD homeodomain 73 115 IPR001356 GO:0003677
Trme129958g00001 116 ProSiteProfiles ELK domain profile. 50 70 IPR005539 GO:0003677
Trme129958g00001 116 MobiDBLite consensus disorder prediction 1 35 - -
Trme129958g00001 116 SUPERFAMILY Homeodomain-like 72 115 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme129958g00001 Trme-Chr129958 82 598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme129958g00001 1 116 Homeobox Transcription Factor Family AT1G62990 81.897 5.86e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme129958g00001 - - tpra:123907403 236.113