Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme12980g00001 ATGGCAGGTTCTAACCGATCATCTTCTCTGAGAGATACTCAACGATCGATTCCTGTTGGAACTTTATCTGCAACTCTTGTAACTTCTTGTATGTATCTTATTTCTGTGGTAATGTTTGGCGCCATTGCCACCAGAGAGAAGCTTTTAACTGACAGGTTGCTTACAGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACCATGGGTGCTGCTCTTCAGAGCCTGACTGGTGCCCCACGTCTGCTTGCAGCTATAGCCAATGATGATATTTTACCTATTCTGAACTACTTTAAAGTTGCAGATGGCAGTGAGCCACATGTTGCTACCCTTTTTACTGCTTTCCTATGTATTGGGTGTGTCATCATTGGGAATCTTGATCTTATCACTCCAACTGTGACCATGTTTTTCCTTCTGTGTTATTCTGGTGTCAACTTATCCTGCTTCCTTCTCGATCTACTAGATGCTCCTAGTTGGCGTCCTCGGTGGAAATTTCATCATTGGAGTTTGTCGCTTCTAGGAGCATTACTTTGCGTAGCTACAACAAGGACAGAAGAAAATCCTTTTCTGTAA 591 0.4213 MAGSNRSSSLRDTQRSIPVGTLSATLVTSCMYLISVVMFGAIATREKLLTDRLLTATVAWPFPSLIKIGIILSTMGAALQSLTGAPRLLAAIANDDILPILNYFKVADGSEPHVATLFTAFLCIGCVIIGNLDLITPTVTMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGALLCVATTRTEENPFL 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme12980g00001 196 Gene3D Amino acid/polyamine transporter I 1 195 - -
Trme12980g00001 196 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
Trme12980g00001 196 Pfam Amino acid permease 2 186 IPR004841 GO:0016020|GO:0055085
Trme12980g00001 196 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 1 187 IPR004842 GO:0006811|GO:0015377|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme12980g00001 Trme-Chr12980 311 1539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme12980g00001 1 185 Inorganic Solute Cotransporters AT1G30450 84.324 1.39e-106 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme12980g00001 K14427 - pvu:PHAVU_009G216800g 352.058